QDNAseqReadCounts: Container for QDNAseq read count data

In QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations

Description

Container for QDNAseq read count data

Assay data elements

An object of this class contains (a subset) the following elements:

counts

(numeric) Binned read counts as non-negative integers in \{0,1,2,...\}. An object with only this field is created by binReadCounts().

fit

(numeric; optional) Loess fit of "count" signals as doubles. Normally, these should all be positive values, but a small number of edge case bins might contain negatives, especially when fitting unfiltered data. This element is added after calling estimateCorrection().

Missing values

The bin data (assay data) may contain missing values.

Author(s)

Ilari Scheinin

QDNAseq documentation built on Nov. 8, 2020, 6:57 p.m.