poolRuns: Pools binned read counts across samples

Description Usage Arguments Value Author(s) Examples

Description

Pools binned read counts across samples.

Usage

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poolRuns(object, samples, force=FALSE)

Arguments

object

A QDNAseqReadCounts or QDNAseqCopyNumbers object.

samples

A character vector of new sample names. Samples with identical names will be pooled together. Must be the same length as there are samples in object.

force

Whether to force the operation even when downstream data will be lost.

Value

Returns a QDNAseqReadCounts or QDNAseqCopyNumbers object.

Author(s)

Ilari Scheinin

Examples

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data(LGG150)
readCounts <- LGG150
# Note: the following command will "pool" data from a single run, which
# does not really make sense:
pooledReadCounts <- poolRuns(readCounts, "LGG150")

Example output



QDNAseq documentation built on Nov. 8, 2020, 6:57 p.m.