noisePlot: Plot noise as a function of sequence depth

In QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations

Description

Plot noise as a function of sequence depth.

Usage

noisePlot(x, y, ...)

Arguments

x	A QDNAseqReadCounts object.
y	missing
...	Further arguments to plot and text.

Author(s)

Ilari Scheinin

Examples

data(LGG150)
readCounts <- LGG150
readCountsFiltered <- applyFilters(readCounts)
readCountsFiltered <- estimateCorrection(readCountsFiltered)
noisePlot(readCountsFiltered)

Example output

38,819	total bins
38,819	of which in selected chromosomes
36,722	of which with reference sequence
33,347	final bins
Calculating correction for GC content and mappability
    Calculating fit for sample LGG150 (1 of 1) ...
Done.
Warning message:
system call failed: Cannot allocate memory 

QDNAseq documentation built on Nov. 8, 2020, 6:57 p.m.