frequencyPlot: Plot copy number aberration frequencies

In QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations

Description

Plot copy number aberration frequencies.

Usage

frequencyPlot(x, y, ...)

Arguments

x	A QDNAseqCopyNumbers object with calls data.
y	missing
...	...

Author(s)

Ilari Scheinin

Examples

data(LGG150)
readCounts <- LGG150
readCountsFiltered <- applyFilters(readCounts)
readCountsFiltered <- estimateCorrection(readCountsFiltered)
copyNumbers <- correctBins(readCountsFiltered)
copyNumbersNormalized <- normalizeBins(copyNumbers)
copyNumbersSmooth <- smoothOutlierBins(copyNumbersNormalized)
copyNumbersSegmented <- segmentBins(copyNumbersSmooth)
copyNumbersSegmented <- normalizeSegmentedBins(copyNumbersSegmented)
copyNumbersCalled <- callBins(copyNumbersSegmented)
frequencyPlot(copyNumbersCalled)

QDNAseq documentation built on Nov. 8, 2020, 6:57 p.m.