API for RCAS
RNA Centric Annotation System

Global functions
calculateCoverageProfile Man page Source code
calculateCoverageProfileFromTxdb Man page Source code
calculateCoverageProfileList Man page Source code
calculateCoverageProfileListFromTxdb Man page Source code
calculateEnrichment Source code
createControlRegions Man page Source code
createDB Man page Source code
createOrthologousGeneSetList Man page Source code
deleteSampleDataFromDB Man page Source code
discoverFeatureSpecificMotifs Man page Source code
extractSequences Man page Source code
findLongLines Source code
geneSets Man page
getBioMartConnection Source code
getFeatureBoundaryCoverage Man page Source code
getFeatureBoundaryCoverageBin Man page Source code
getFeatureBoundaryCoverageMulti Man page Source code
getIntervalOverlapMatrix Man page Source code
getMotifSummaryTable Man page Source code
getTargetedGenesTable Man page Source code
getTxdbFeatures Man page Source code
getTxdbFeaturesFromGRanges Man page Source code
gff Man page
importBed Man page Source code
importBedFiles Man page Source code
importGtf Man page Source code
insertTableAnnotationSummaries Source code
insertTableBedData Source code
insertTableDiscoveredMotifs Source code
insertTableFeatureBoundaryCoverageProfiles Source code
insertTableGtfData Source code
insertTableOverlapMatrix Source code
parseMsigdb Man page Source code
plotFeatureBoundaryCoverage Man page Source code
printMsigdbDataset Man page Source code
processHits Source code
queryGff Man page Source code
queryRegions Man page
retrieveOrthologs Man page Source code
runGSEA Man page Source code
runMotifRG Man page Source code
runReport Man page Source code
runReportMetaAnalysis Man page Source code
runTopGO Man page Source code
summarizeDatabaseContent Man page Source code
summarizeQueryRegions Man page Source code
summarizeQueryRegionsMulti Man page Source code
validateProjDataFile Source code
RCAS documentation built on Nov. 17, 2017, 12:05 p.m.