API for RCAS
RNA Centric Annotation System

Global functions
calculateCoverageProfile Man page
calculateCoverageProfileFromTxdb Man page
calculateCoverageProfileList Man page
calculateCoverageProfileListFromTxdb Man page
checkSeqDb Man page Source code
countPattern Source code
createControlRegions Man page
createDB Man page Source code
createOrthologousGeneSetList Man page Source code
deleteSampleDataFromDB Man page Source code
discoverFeatureSpecificMotifs Man page Source code
extractMatches Source code
extractSequences Man page
findDifferentialMotifs Man page Source code
findEnrichedFunctions Man page Source code
generateKmers Man page Source code
getFeatureBoundaryCoverage Man page
getFeatureBoundaryCoverageBin Man page
getFeatureBoundaryCoverageMulti Man page Source code
getIntervalOverlapMatrix Man page Source code
getMotifSummaryTable Man page Source code
getTargetedGenesTable Man page
getTxdbFeatures Man page
getTxdbFeaturesFromGRanges Man page
gff Man page
importBed Man page
importBedFiles Man page Source code
importGtf Man page
insertTableAnnotationSummaries Source code
insertTableBedData Source code
insertTableDiscoveredMotifs Source code
insertTableFeatureBoundaryCoverageProfiles Source code
insertTableGtfData Source code
insertTableOverlapMatrix Source code
parseMsigdb Man page Source code
plotFeatureBoundaryCoverage Man page
printMsigdbDataset Man page Source code
processHits Source code
queryGff Man page Source code
queryRegions Man page
retrieveOrthologs Man page Source code
runGSEA Man page
runMotifDiscovery Man page
runMotifRG Man page Source code
runReport Man page Source code
runReportMetaAnalysis Man page Source code
runTopGO Man page
summarizeDatabaseContent Man page Source code
summarizeQueryRegions Man page Source code
summarizeQueryRegionsMulti Man page Source code
validateProjDataFile Source code
RCAS documentation built on Nov. 8, 2020, 8:03 p.m.