Man pages for RCAS
RNA Centric Annotation System

calculateCoverageProfilecalculateCoverageProfile
calculateCoverageProfileFromTxdbcalculateCoverageProfileFromTxdb
calculateCoverageProfileListcalculateCoverageProfileList
calculateCoverageProfileListFromTxdbcalculateCoverageProfileListFromTxdb
createControlRegionscreateControlRegions
createDBcreateDB
createOrthologousGeneSetListcreateOrthologousMsigdbDataset
deleteSampleDataFromDBdeleteSampleDataFromDB
discoverFeatureSpecificMotifsdiscoverFeatureSpecificMotifs
extractSequencesextractSequences
geneSetsRandom test gene sets
getFeatureBoundaryCoveragegetFeatureBoundaryCoverage
getFeatureBoundaryCoverageBingetFeatureBoundaryCoverageBin
getFeatureBoundaryCoverageMultigetFeatureBoundaryCoverageMulti
getIntervalOverlapMatrixgetIntervalOverlapMatrix
getMotifSummaryTablegetMotifSummaryTable
getTargetedGenesTablegetTargetedGenesTable
getTxdbFeaturesgetTxdbFeatures
getTxdbFeaturesFromGRangesgetTxdbFeaturesFromGRanges
gffSample GFF file imported as a GRanges object
importBedimportBed
importBedFilesimportBedFiles
importGtfimportGtf
parseMsigdbparseMsigdb
plotFeatureBoundaryCoverageplotFeatureBoundaryCoverage
printMsigdbDatasetPrint MSIGDB Dataset to a file This function is used to print...
queryGffqueryGff
queryRegionsSample BED file imported as a GRanges object
retrieveOrthologsretrieveOrthologs
runGSEArunGSEA
runMotifRGrunMotifRG
runReportGenerate a RCAS Report for a list of transcriptome-level...
runReportMetaAnalysisrunReportMetaAnalysis
runTopGOrunTopGO
summarizeDatabaseContentsummarizeDatabaseContent
summarizeQueryRegionssummarizeQueryRegions
summarizeQueryRegionsMultisummarizeQueryRegionsMulti
RCAS documentation built on Nov. 17, 2017, 12:05 p.m.