getAllEdges

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Description

Retrieve all edges in the current graph, expressed in the standard Cytoscape notation.

Usage

1

Arguments

obj

a CytoscapeWindowClass object.

Value

A list of character strings.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

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  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('getAllEdges.test', graph=makeSimpleGraph())
  displayGraph (cw)
  print (getAllEdges (cw))
    # [1] "A (phosphorylates) B"   "B (synthetic lethal) C" "C (undefined) A"    

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