Files in RCy3
Functions to Access and Control Cytoscape

LICENSE
NEWS
NAMESPACE
.travis.yml
DESCRIPTION
README.md tests/runTests.R
docs/pkgdown.css
docs/docsearch.css
docs/authors.html
docs/pkgdown.yml
docs/404.html
docs/docsearch.js
docs/LICENSE-text.html
docs/pkgdown.js
docs/link.svg
docs/index.html
docs/articles/Upgrading-existing-scripts.html
docs/articles/Cytoscape-and-graphNEL.html
docs/articles/Phylogenetic-trees.html
docs/articles/Overview-of-RCy3.html
docs/articles/Custom-Graphics.html
docs/articles/Group-nodes.html
docs/articles/Network-functions-and-visualization.html
docs/articles/Cytoscape-and-iGraph.html
docs/articles/Cancer-networks-and-data.html
docs/articles/Identifier-mapping.html
docs/articles/Importing-data.html
docs/articles/index.html
docs/articles/Cytoscape-and-NDEx.html
docs/articles/Filtering-Networks.html
docs/reference/toggleGraphicsDetails.html
docs/reference/diffusionBasic.html
docs/reference/setNodeBorderColorMapping.html
docs/reference/closeSession.html
docs/reference/setNodeLabelDefault.html
docs/reference/getNetworkZoom.html
docs/reference/getAllEdges.html
docs/reference/unhideAll.html
docs/reference/setEdgeLabelBypass.html
docs/reference/setNodeBorderOpacityDefault.html
docs/reference/deleteSelfLoops.html
docs/reference/selectAllEdges.html
docs/reference/setNodeSizeDefault.html
docs/reference/setEdgeOpacityMapping.html
docs/reference/setNodeCustomRingChart.html
docs/reference/getFirstNeighbors.html
docs/reference/createVisualStyle.html
docs/reference/unhideNodes.html
docs/reference/setNodeBorderWidthBypass.html
docs/reference/setNodeCustomRadialGradient.html
docs/reference/hidePanel.html
docs/reference/exportVisualStyles.html
docs/reference/getNetworkCount.html
docs/reference/setEdgeLineStyleMapping.html
docs/reference/cyrestPOST.html
docs/reference/openSession.html
docs/reference/setEdgeTargetArrowShapeMapping.html
docs/reference/commandsRun.html
docs/reference/cytoscapeMemoryStatus.html
docs/reference/getArrowShapes.html
docs/reference/setCurrentNetwork.html
docs/reference/importFilters.html
docs/reference/clearNetworkCenterBypass.html
docs/reference/setEdgeSourceArrowMapping.html
docs/reference/hideNodes.html
docs/reference/cytoscapePing.html
docs/reference/getNodeColor.html
docs/reference/setNodeCustomHeatMapChart.html
docs/reference/setNodeFontFaceDefault.html
docs/reference/setEdgeColorMapping.html
docs/reference/setNodeSelectionColorDefault.html
docs/reference/exportNetworkToNDEx.html
docs/reference/setEdgeLabelColorDefault.html
docs/reference/setNodeWidthDefault.html
docs/reference/updateNetworkInNDEx.html
docs/reference/getAllNodes.html
docs/reference/createCompositeFilter.html
docs/reference/setEdgeLabelOpacityDefault.html
docs/reference/setNodeHeightMapping.html
docs/reference/setEdgeTooltipMapping.html
docs/reference/setEdgeTooltipDefault.html
docs/reference/layoutCopycat.html
docs/reference/setEdgeLineWidthMapping.html
docs/reference/getStyleDependencies.html
docs/reference/RCy3.html
docs/reference/cyrestAPI.html
docs/reference/commandQuit.html
docs/reference/cybrowserDialog.html
docs/reference/addCyNodes.html
docs/reference/getTableColumnNames.html
docs/reference/cybrowserVersion.html
docs/reference/getEdgeLineWidth.html
docs/reference/setNodeLabelMapping.html
docs/reference/commandOpenDialog.html
docs/reference/clearSelection.html
docs/reference/getVisualPropertyNames.html
docs/reference/cybrowserList.html
docs/reference/getNodeCount.html
docs/reference/exportNetwork.html
docs/reference/hideSelectedNodes.html
docs/reference/deleteNetwork.html
docs/reference/selectNodes.html
docs/reference/getTableColumns.html
docs/reference/getEdgeTargetArrowShape.html
docs/reference/exportImage.html
docs/reference/setEdgeTargetArrowShapeBypass.html
docs/reference/setNodeHeightBypass.html
docs/reference/cytoscapeNumberOfCores.html
docs/reference/setNetworkZoomBypass.html
docs/reference/selectEdgesConnectingSelectedNodes.html
docs/reference/floatPanel.html
docs/reference/createColumnFilter.html
docs/reference/setEdgeFontSizeBypass.html
docs/reference/setNodeBorderOpacityMapping.html
docs/reference/cytoscapeApiVersions.html
docs/reference/setVisualPropertyDefault.html
docs/reference/updateStyleDefaults.html
docs/reference/createGroupByColumn.html
docs/reference/getNodeWidth.html
docs/reference/selectEdgesAdjacentToSelectedNodes.html
docs/reference/invertEdgeSelection.html
docs/reference/createDegreeFilter.html
docs/reference/setEdgeOpacityDefault.html
docs/reference/setNodeFillOpacityMapping.html
docs/reference/setEdgeColorBypass.html
docs/reference/setNodeWidthBypass.html
docs/reference/createSubnetwork.html
docs/reference/setEdgeSourceArrowShapeDefault.html
docs/reference/deleteTableColumn.html
docs/reference/clearEdgePropertyBypass.html
docs/reference/installApp.html
docs/reference/setNodeFontFaceBypass.html
docs/reference/lockNodeDimensions.html
docs/reference/makeSimpleIgraph.html
docs/reference/selectAllNodes.html
docs/reference/getCollectionName.html
docs/reference/setNodeCustomBoxChart.html
docs/reference/setEdgeSourceArrowColorMapping.html
docs/reference/hideSelectedEdges.html
docs/reference/getSelectedEdgeCount.html
docs/reference/deleteSelectedEdges.html
docs/reference/createIgraphFromNetwork.html
docs/reference/deleteGroup.html
docs/reference/clearNodeOpacityBypass.html
docs/reference/collapseGroup.html
docs/reference/setNodeCustomPosition.html
docs/reference/dockPanel.html
docs/reference/setEdgeOpacityBypass.html
docs/reference/listGroups.html
docs/reference/getUninstalledApps.html
docs/reference/setEdgeTargetArrowColorBypass.html
docs/reference/setNodeBorderColorDefault.html
docs/reference/getEdgeInfo.html
docs/reference/setNodeShapeBypass.html
docs/reference/setEdgeTargetArrowColorMapping.html
docs/reference/setNetworkCenterBypass.html
docs/reference/setNodeSizeMapping.html
docs/reference/commandsAPI.html
docs/reference/expandGroup.html
docs/reference/getEdgeProperty.html
docs/reference/commandPause.html
docs/reference/selectFirstNeighbors.html
docs/reference/setNodeCustomPieChart.html
docs/reference/cloneNetwork.html
docs/reference/setNodeTooltipDefault.html
docs/reference/setNodeTooltipBypass.html
docs/reference/getGroupInfo.html
docs/reference/importVisualStyles.html
docs/reference/setEdgeFontFaceBypass.html
docs/reference/getSelectedNodeCount.html
docs/reference/createNetworkFromGraph.html
docs/reference/getVisualPropertyDefault.html
docs/reference/setNodeComboOpacityMapping.html
docs/reference/setNodePropertyBypass.html
docs/reference/getSelectedNodes.html
docs/reference/getLayoutPropertyType.html
docs/reference/cyrestGET.html
docs/reference/setEdgeLabelDefault.html
docs/reference/createNetworkFromIgraph.html
docs/reference/disableApp.html
docs/reference/getEdgeSelectionColorDefault.html
docs/reference/setNodeLabelColorDefault.html
docs/reference/getAppUpdates.html
docs/reference/setNodeLabelOpacityBypass.html
docs/reference/setNetworkPropertyBypass.html
docs/reference/selectNodesConnectedBySelectedEdges.html
docs/reference/unhideEdges.html
docs/reference/importNetworkFromNDEx.html
docs/reference/setEdgeSourceArrowShapeMapping.html
docs/reference/copyVisualStyle.html
docs/reference/getNodeSize.html
docs/reference/getCollectionList.html
docs/reference/saveSession.html
docs/reference/selectEdges.html
docs/reference/deleteDuplicateEdges.html
docs/reference/getNetworkViews.html
docs/reference/commandsPOST.html
docs/reference/removeNodeCustomGraphics.html
docs/reference/setNodeSizeBypass.html
docs/reference/setNodeFontFaceMapping.html
docs/reference/cybrowserShow.html
docs/reference/getNodeSelectionColorDefault.html
docs/reference/createGroup.html
docs/reference/setStyleDependencies.html
docs/reference/setEdgeLabelOpacityMapping.html
docs/reference/getNetworkSuid.html
docs/reference/cybrowserHide.html
docs/reference/setNodeLabelColorMapping.html
docs/reference/addCyEdges.html
docs/reference/getNodeShapes.html
docs/reference/setNodeHeightDefault.html
docs/reference/setEdgeLineWidthDefault.html
docs/reference/uninstallApp.html
docs/reference/setEdgeSourceArrowColorBypass.html
docs/reference/cybrowserSend.html
docs/reference/getFilterList.html
docs/reference/layoutNetwork.html
docs/reference/getLayoutNames.html
docs/reference/setEdgeFontFaceMapping.html
docs/reference/syncNodeCustomGraphicsSize.html
docs/reference/getSelectedEdges.html
docs/reference/commandSleep.html
docs/reference/setNodeShapeDefault.html
docs/reference/getAppStatus.html
docs/reference/cyrestDELETE.html
docs/reference/setNodeColorBypass.html
docs/reference/deleteAllNetworks.html
docs/reference/getCollectionNetworks.html
docs/reference/matchArrowColorToEdge.html
docs/reference/commandEcho.html
docs/reference/setEdgeFontFaceDefault.html
docs/reference/getTableColumnTypes.html
docs/reference/setVisualStyle.html
docs/reference/makeSimpleGraph.html
docs/reference/getInstalledApps.html
docs/reference/getBackgroundColorDefault.html
docs/reference/getLayoutPropertyNames.html
docs/reference/setEdgeLabelMapping.html
docs/reference/getEdgeColor.html
docs/reference/getAvailableApps.html
docs/reference/createGraphFromNetwork.html
docs/reference/exportFilters.html
docs/reference/renameNetwork.html
docs/reference/mapTableColumn.html
docs/reference/clearNodePropertyBypass.html
docs/reference/setEdgeLineStyleBypass.html
docs/reference/setNodeLabelOpacityDefault.html
docs/reference/setNodeShapeMapping.html
docs/reference/diffusionAdvanced.html
docs/reference/setNodeLabelColorBypass.html
docs/reference/getEdgeLineStyle.html
docs/reference/clearNetworkZoomBypass.html
docs/reference/invertNodeSelection.html
docs/reference/setEdgeLineWidthBypass.html
docs/reference/enableApp.html
docs/reference/openAppStore.html
docs/reference/deleteSelectedNodes.html
docs/reference/setEdgeTargetArrowMapping.html
docs/reference/setNodeLabelBypass.html
docs/reference/setEdgeTooltipBypass.html
docs/reference/fitContent.html
docs/reference/setNodeFontSizeMapping.html
docs/reference/deleteVisualStyle.html
docs/reference/getNetworkName.html
docs/reference/getTableValue.html
docs/reference/setEdgeFontSizeDefault.html
docs/reference/setNodeTooltipMapping.html
docs/reference/setNodeBorderWidthMapping.html
docs/reference/importNetworkFromFile.html
docs/reference/cytoscapeFreeMemory.html
docs/reference/getLayoutPropertyValue.html
docs/reference/hideEdges.html
docs/reference/getEdgeCount.html
docs/reference/cytoscapeVersionInfo.html
docs/reference/setEdgeTargetArrowColorDefault.html
docs/reference/getNetworkList.html
docs/reference/setNodeBorderColorBypass.html
docs/reference/setNodeFillOpacityDefault.html
docs/reference/setNodeCustomLinearGradient.html
docs/reference/getLineStyles.html
docs/reference/getNodePosition.html
docs/reference/getDisabledApps.html
docs/reference/cyrestPUT.html
docs/reference/clearNetworkPropertyBypass.html
docs/reference/updateStyleMapping.html
docs/reference/AddToGroup.html
docs/reference/setEdgeSourceArrowShapeBypass.html
docs/reference/setEdgeTargetArrowShapeDefault.html
docs/reference/setNodeCustomLineChart.html
docs/reference/setEdgeSourceArrowColorDefault.html
docs/reference/getNetworkProperty.html
docs/reference/index.html
docs/reference/getAppInformation.html
docs/reference/setNodeBorderOpacityBypass.html
docs/reference/getLayoutNameMapping.html
docs/reference/getCollectionSuid.html
docs/reference/setNodeColorMapping.html
docs/reference/setEdgeLabelColorMapping.html
docs/reference/setCurrentView.html
docs/reference/renameTableColumn.html
docs/reference/setNodeColorDefault.html
docs/reference/clearEdgeBends.html
docs/reference/setEdgeLabelOpacityBypass.html
docs/reference/getNetworkNDExId.html
docs/reference/getNodeHeight.html
docs/reference/setNodeOpacityBypass.html
docs/reference/setNodeCustomBarChart.html
docs/reference/getNetworkViewSuid.html
docs/reference/applyFilter.html
docs/reference/setEdgeLabelColorBypass.html
docs/reference/setEdgeColorDefault.html
docs/reference/setEdgeSelectionColorDefault.html
docs/reference/getNetworkCenter.html
docs/reference/setNodeLabelOpacityMapping.html
docs/reference/setNodeFontSizeDefault.html
docs/reference/updateApp.html
docs/reference/setEdgePropertyBypass.html
docs/reference/loadTableData.html
docs/reference/hideAllPanels.html
docs/reference/setBackgroundColorDefault.html
docs/reference/deleteStyleMapping.html
docs/reference/createNetworkFromDataFrames.html
docs/reference/commandRunFile.html
docs/reference/commandsHelp.html
docs/reference/setEdgeFontSizeMapping.html
docs/reference/getVisualStyleNames.html
docs/reference/setNodeWidthMapping.html
docs/reference/mapVisualProperty.html
docs/reference/commandsGET.html
docs/reference/bundleEdges.html
docs/reference/setEdgeLineStyleDefault.html
docs/reference/cybrowserClose.html
docs/reference/RemoveFromGroup.html
docs/reference/setNodeBorderWidthDefault.html
docs/reference/setNodeFillOpacityBypass.html
docs/reference/setLayoutProperties.html
docs/reference/setNodeFontSizeBypass.html
docs/reference/getNodeProperty.html
R/Groups.R R/Collections.R R/StyleBypasses.R R/Apps.R R/CytoscapeSystem.R R/NetworkSelection.R R/StyleValues.R R/Commands.R R/Layouts.R R/StyleMappings.R R/Session.R R/NetworkViews.R R/StyleDefaults.R R/RCy3-deprecated.R R/UserInterface.R R/CyNDEx.R R/Networks.R R/Tables.R R/RCy3.R R/Tools.R R/Styles.R R/Filters.R R/RCy3-utils.R R/StyleDependencies.R man/RCy3.Rd man/getEdgeInfo.Rd man/addCyNodes.Rd man/getAllEdges.Rd man/addCyEdges.Rd man/selectAllEdges.Rd man/getEdgeLineWidth.Rd man/exportFilters.Rd man/commandOpenDialog.Rd man/setNodeWidthMapping.Rd man/setNodeFontSizeMapping.Rd man/getTableColumnTypes.Rd man/getLayoutPropertyValue.Rd man/getBackgroundColorDefault.Rd man/getAvailableApps.Rd man/setNodeCustomBarChart.Rd man/getLayoutNameMapping.Rd man/cytoscapePing.Rd man/getNetworkZoom.Rd man/setNodeColorBypass.Rd man/setEdgeColorDefault.Rd man/getNetworkViews.Rd man/clearNetworkPropertyBypass.Rd man/getNetworkCount.Rd man/deleteSelectedEdges.Rd man/setEdgeSourceArrowColorMapping.Rd man/setNodeCustomLinearGradient.Rd man/importFilters.Rd man/diffusionBasic.Rd man/setNodeLabelMapping.Rd man/setNodePropertyBypass.Rd man/setEdgeOpacityBypass.Rd man/setEdgeLabelColorMapping.Rd man/getSelectedEdgeCount.Rd man/createCompositeFilter.Rd man/setNodeFontSizeBypass.Rd man/commandQuit.Rd man/setNodeSizeBypass.Rd man/setNodeBorderWidthDefault.Rd man/listGroups.Rd man/setNodeHeightDefault.Rd man/createColumnFilter.Rd man/getEdgeSelectionColorDefault.Rd man/setEdgeLabelColorDefault.Rd man/getNodeSelectionColorDefault.Rd man/updateApp.Rd man/diffusionAdvanced.Rd man/getEdgeColor.Rd man/cloneNetwork.Rd man/setNodeShapeDefault.Rd man/getDisabledApps.Rd man/getCollectionName.Rd man/setNodeFillOpacityMapping.Rd man/commandRunFile.Rd man/selectFirstNeighbors.Rd man/getNodePosition.Rd man/getLineStyles.Rd man/openSession.Rd man/deleteGroup.Rd man/setEdgeLabelBypass.Rd man/setNodeCustomLineChart.Rd man/setCurrentNetwork.Rd man/invertEdgeSelection.Rd man/makeSimpleIgraph.Rd man/getTableValue.Rd man/layoutCopycat.Rd man/getEdgeLineStyle.Rd man/collapseGroup.Rd man/commandsHelp.Rd man/RemoveFromGroup.Rd man/mapTableColumn.Rd man/uninstallApp.Rd man/setNodeCustomBoxChart.Rd man/expandGroup.Rd man/commandEcho.Rd man/setNetworkCenterBypass.Rd man/setNodeOpacityBypass.Rd man/getUninstalledApps.Rd man/setEdgeTargetArrowShapeDefault.Rd man/deleteSelfLoops.Rd man/setNodeLabelOpacityBypass.Rd man/getAllNodes.Rd man/renameNetwork.Rd man/setEdgeLineStyleMapping.Rd man/setNodeLabelColorMapping.Rd man/cybrowserShow.Rd man/createIgraphFromNetwork.Rd man/setNodeWidthDefault.Rd man/getGroupInfo.Rd man/createVisualStyle.Rd man/setEdgeSourceArrowColorDefault.Rd man/commandPause.Rd man/commandsGET.Rd man/setEdgeColorMapping.Rd man/cytoscapeFreeMemory.Rd man/clearEdgePropertyBypass.Rd man/mergeNetworks.Rd man/mapVisualProperty.Rd man/exportVisualStyles.Rd man/setEdgeTargetArrowShapeBypass.Rd man/getNodeColor.Rd man/deleteDuplicateEdges.Rd man/setEdgeSourceArrowColorBypass.Rd man/setNetworkZoomBypass.Rd man/hidePanel.Rd man/clearSelection.Rd man/setNodeBorderColorBypass.Rd man/setNetworkPropertyBypass.Rd man/setEdgeLineWidthDefault.Rd man/setEdgeFontFaceBypass.Rd man/setNodeBorderWidthMapping.Rd man/getInstalledApps.Rd man/getNetworkProperty.Rd man/setVisualStyle.Rd man/createDegreeFilter.Rd man/setNodeHeightMapping.Rd man/getAppStatus.Rd man/createSubnetwork.Rd man/selectNodesConnectedBySelectedEdges.Rd man/selectEdges.Rd man/unhideEdges.Rd man/setEdgeLabelOpacityBypass.Rd man/hideAllPanels.Rd man/setNodeSelectionColorDefault.Rd man/exportImage.Rd man/getVisualPropertyNames.Rd man/setEdgeColorBypass.Rd man/loadTableData.Rd man/setEdgeTooltipDefault.Rd man/getEdgeTargetArrowShape.Rd man/cyrestDELETE.Rd man/hideSelectedNodes.Rd man/syncNodeCustomGraphicsSize.Rd man/invertNodeSelection.Rd man/setNodeBorderWidthBypass.Rd man/setEdgeLineStyleBypass.Rd man/cybrowserVersion.Rd man/setNodeWidthBypass.Rd man/cybrowserList.Rd man/setEdgeLabelColorBypass.Rd man/dockPanel.Rd man/getNetworkList.Rd man/getNetworkCenter.Rd man/setEdgeLineStyleDefault.Rd man/getNodeProperty.Rd man/cytoscapeVersionInfo.Rd man/closeSession.Rd man/setLayoutProperties.Rd man/createGraphFromNetwork.Rd man/disableApp.Rd man/copyVisualStyle.Rd man/setBackgroundColorDefault.Rd man/setEdgeSourceArrowShapeBypass.Rd man/commandsRun.Rd man/setNodeBorderColorDefault.Rd man/setNodeLabelOpacityMapping.Rd man/setNodeFontSizeDefault.Rd man/getVisualStyleNames.Rd man/getArrowShapes.Rd man/setEdgeOpacityDefault.Rd man/setEdgeSourceArrowShapeDefault.Rd man/getNodeHeight.Rd man/setNodeLabelColorDefault.Rd man/createGroupByColumn.Rd man/deleteTableColumn.Rd man/getCurrentStyle.Rd man/getSelectedEdges.Rd man/setNodeFontFaceMapping.Rd man/setEdgeSelectionColorDefault.Rd man/getTableColumnNames.Rd man/setVisualPropertyDefault.Rd man/setNodeFontFaceBypass.Rd man/floatPanel.Rd man/setNodeTooltipMapping.Rd man/deleteVisualStyle.Rd man/deleteAllNetworks.Rd man/getNodeShapes.Rd man/openAppStore.Rd man/cyrestPUT.Rd man/clearNetworkZoomBypass.Rd man/unhideNodes.Rd man/removeNodeCustomGraphics.Rd man/getEdgeCount.Rd man/enableApp.Rd man/setEdgeLabelOpacityMapping.Rd man/deleteSelectedNodes.Rd man/setEdgeLabelOpacityDefault.Rd man/selectNodes.Rd man/matchArrowColorToEdge.Rd man/createNetworkFromGraph.Rd man/importNetworkFromNDEx.Rd man/getAppInformation.Rd man/getNetworkSuid.Rd man/getNodeSize.Rd man/setNodeCustomPieChart.Rd man/deleteStyleMapping.Rd man/updateStyleMapping.Rd man/unhideAll.Rd man/getLayoutPropertyType.Rd man/setNodeHeightBypass.Rd man/createNetworkFromDataFrames.Rd man/cytoscapeNumberOfCores.Rd man/setEdgeFontSizeMapping.Rd man/getFirstNeighbors.Rd man/getCollectionSuid.Rd man/clearEdgeBends.Rd man/exportNetwork.Rd man/getAppUpdates.Rd man/setEdgeFontSizeBypass.Rd man/setNodeShapeBypass.Rd man/setEdgeSourceArrowShapeMapping.Rd man/getNetworkName.Rd man/setEdgeFontFaceMapping.Rd man/createGroup.Rd man/setNodeBorderOpacityMapping.Rd man/setNodeComboOpacityMapping.Rd man/cyrestAPI.Rd man/setNodeBorderOpacityBypass.Rd man/hideSelectedEdges.Rd man/setNodeLabelDefault.Rd man/getLayoutPropertyNames.Rd man/setNodeFillOpacityBypass.Rd man/makeSimpleGraph.Rd man/setEdgeLabelMapping.Rd man/deleteNetwork.Rd man/layoutNetwork.Rd man/setNodeCustomHeatMapChart.Rd man/setEdgePropertyBypass.Rd man/renameTableColumn.Rd man/setEdgeFontSizeDefault.Rd man/cybrowserSend.Rd man/setNodeCustomRadialGradient.Rd man/analyzeNetwork.Rd man/setEdgeTargetArrowColorBypass.Rd man/getStyleDependencies.Rd man/getNodeCount.Rd man/setEdgeSourceArrowMapping.Rd man/setStyleDependencies.Rd man/getFilterList.Rd man/setEdgeTargetArrowMapping.Rd man/selectEdgesConnectingSelectedNodes.Rd man/cybrowserHide.Rd man/cyrestGET.Rd man/createNetworkFromIgraph.Rd man/cytoscapeMemoryStatus.Rd man/saveSession.Rd man/getNetworkNDExId.Rd man/hideEdges.Rd man/commandSleep.Rd man/clearNetworkCenterBypass.Rd man/setNodeBorderColorMapping.Rd man/cyrestPOST.Rd man/getVisualPropertyDefault.Rd man/getLayoutNames.Rd man/setNodeShapeMapping.Rd man/applyFilter.Rd man/setEdgeTargetArrowColorDefault.Rd man/getNetworkViewSuid.Rd man/setNodeLabelColorBypass.Rd man/setNodeFillOpacityDefault.Rd man/setEdgeFontFaceDefault.Rd man/setEdgeOpacityMapping.Rd man/setNodeSizeDefault.Rd man/cytoscapeApiVersions.Rd man/getCollectionList.Rd man/installApp.Rd man/commandsPOST.Rd man/importNetworkFromFile.Rd man/getCollectionNetworks.Rd man/lockNodeDimensions.Rd man/updateNetworkInNDEx.Rd man/getTableColumns.Rd man/setNodeTooltipDefault.Rd man/setNodeLabelBypass.Rd man/cybrowserDialog.Rd man/commandsAPI.Rd man/setEdgeTooltipBypass.Rd man/getSelectedNodeCount.Rd man/setNodeTooltipBypass.Rd man/setEdgeLineWidthMapping.Rd man/importVisualStyles.Rd man/clearNodeOpacityBypass.Rd man/setNodeBorderOpacityDefault.Rd man/selectAllNodes.Rd man/exportNetworkToNDEx.Rd man/setNodeColorDefault.Rd man/bundleEdges.Rd man/clearNodePropertyBypass.Rd man/setEdgeLabelDefault.Rd man/getNodeWidth.Rd man/setEdgeLineWidthBypass.Rd man/setEdgeTargetArrowColorMapping.Rd man/selectEdgesAdjacentToSelectedNodes.Rd man/setNodeFontFaceDefault.Rd man/setNodeLabelOpacityDefault.Rd man/updateStyleDefaults.Rd man/setNodeCustomPosition.Rd man/setEdgeTargetArrowShapeMapping.Rd man/toggleGraphicsDetails.Rd man/setCurrentView.Rd man/hideNodes.Rd man/getEdgeProperty.Rd man/setNodeSizeMapping.Rd man/setNodeColorMapping.Rd man/fitContent.Rd man/setNodeCustomRingChart.Rd man/getSelectedNodes.Rd man/cybrowserClose.Rd man/setEdgeTooltipMapping.Rd man/AddToGroup.Rd
inst/CITATION
inst/unitTests/test_RCy3.R
inst/extdata/prok_tax_from_silva.tsv
inst/extdata/galFiltered.sif
inst/extdata/galExpData.csv
inst/extdata/tutorial-brc-mut-dataset.robj
inst/extdata/tutorial-ovc-expr-mean-dataset.robj
inst/extdata/virus_prok_cor_abundant.tsv
inst/extdata/tutorial-brc-expr-mean-dataset.robj
inst/extdata/tutorial-ovc-mut-dataset.robj
inst/extdata/phylotree.newick
inst/extdata/lesmis.txt
inst/extdata/phage_ids_with_affiliation.tsv
inst/doc/Phylogenetic-trees.Rmd
inst/doc/Upgrading-existing-scripts.html
inst/doc/Group-nodes.Rmd inst/doc/Importing-data.R inst/doc/Cytoscape-and-graphNEL.Rmd
inst/doc/Cytoscape-and-graphNEL.html
inst/doc/Cytoscape-and-graphNEL.R
inst/doc/Phylogenetic-trees.html
inst/doc/Upgrading-existing-scripts.Rmd inst/doc/Importing-data.Rmd
inst/doc/Overview-of-RCy3.html
inst/doc/Custom-Graphics.html
inst/doc/Cytoscape-and-NDEx.Rmd inst/doc/Identifier-mapping.R inst/doc/Identifier-mapping.Rmd
inst/doc/Group-nodes.html
inst/doc/Upgrading-existing-scripts.R inst/doc/Cytoscape-and-iGraph.R inst/doc/Network-functions-and-visualization.Rmd
inst/doc/Network-functions-and-visualization.html
inst/doc/Overview-of-RCy3.R inst/doc/Custom-Graphics.Rmd
inst/doc/Cytoscape-and-iGraph.html
inst/doc/Filtering-Networks.Rmd inst/doc/Cancer-networks-and-data.Rmd
inst/doc/Cancer-networks-and-data.html
inst/doc/Cancer-networks-and-data.R
inst/doc/Identifier-mapping.html
inst/doc/Phylogenetic-trees.R inst/doc/Overview-of-RCy3.Rmd inst/doc/Network-functions-and-visualization.R
inst/doc/Importing-data.html
inst/doc/Cytoscape-and-iGraph.Rmd inst/doc/Custom-Graphics.R
inst/doc/Cytoscape-and-NDEx.html
inst/doc/Group-nodes.R inst/doc/Cytoscape-and-NDEx.R
inst/doc/Filtering-Networks.html
inst/doc/Filtering-Networks.R
build/vignette.rds
vignettes/Phylogenetic-trees.Rmd vignettes/Group-nodes.Rmd vignettes/Cytoscape-and-graphNEL.Rmd vignettes/Upgrading-existing-scripts.Rmd vignettes/Importing-data.Rmd vignettes/Cytoscape-and-NDEx.Rmd vignettes/Identifier-mapping.Rmd vignettes/Network-functions-and-visualization.Rmd vignettes/Custom-Graphics.Rmd vignettes/Filtering-Networks.Rmd vignettes/Cancer-networks-and-data.Rmd vignettes/Overview-of-RCy3.Rmd vignettes/Cytoscape-and-iGraph.Rmd
RCy3 documentation built on Nov. 21, 2020, 2 a.m.