setEdgeOpacityMapping: Set Edge Opacity Mapping

In RCy3: Functions to Access and Control Cytoscape

Description

Map table column values to opacities to set the edge opacity.

Usage

setEdgeOpacityMapping(
  table.column,
  table.column.values = NULL,
  opacities = NULL,
  mapping.type = "c",
  default.opacity = NULL,
  style.name = NULL,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table.column	Name of Cytoscape table column to map values from
table.column.values	List of values from Cytoscape table to be used in mapping
opacities	(integer) values between 0 and 255; 0 is invisible
mapping.type	(char) continuous, discrete or passthrough (c,d,p); default is continuous
default.opacity	Opacity value to set as default for all unmapped values
style.name	Name of style; default is "default" style
network	(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url	(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

None

Examples

setEdgeOpacityMapping ('weight', c(1,10), c(50,255))

RCy3 documentation built on Nov. 21, 2020, 2 a.m.