API for RCy3
Functions to Access and Control Cytoscape

Global functions
AddToGroup Man page Source code
CytoscapeConnection Man page Source code
CytoscapeConnectiondeprecated Man page
CytoscapeWindow Man page Source code
CytoscapeWindowdeprecated Man page
FastAppendListGlobal Source code
RCy3 Man page
RCy3-package Man page
RemoveFromGroup Man page Source code
addCyEdge Man page Source code
addCyEdgedefunct Man page
addCyEdges Man page Source code
addCyNode Man page Source code
addCyNodedefunct Man page
addCyNodes Man page Source code
addGraphToGraph Man page Source code
addGraphToGraphdefunct Man page
checkPanelName Source code
clearEdgePropertyBypass Man page Source code
clearNetworkCenterBypass Man page Source code
clearNetworkPropertyBypass Man page Source code
clearNetworkZoomBypass Man page Source code
clearNodeOpacityBypass Man page Source code
clearNodePropertyBypass Man page Source code
clearSelection Man page Source code
cloneNetwork Man page Source code
closeSession Man page Source code
collapseGroup Man page Source code
command2getQuery Source code
command2postQueryBody Source code
command2postQueryUrl Source code
commandEcho Man page Source code
commandOpenDialog Man page Source code
commandPause Man page Source code
commandQuit Man page Source code
commandRunFile Man page Source code
commandSleep Man page Source code
commandsAPI Man page Source code
commandsGET Man page Source code
commandsHelp Man page Source code
commandsPOST Man page Source code
commandsRun Man page Source code
connectToNewestCyWindow Man page Source code
connectToNewestCyWindowdefunct Man page
copyCytoscapeNetwork Man page Source code
copyCytoscapeNetworkdeprecated Man page
copyVisualStyle Man page Source code
createGraphFromNetwork Man page Source code
createGroup Man page Source code
createIgraphFromNetwork Man page Source code
createNetworkFromDataFrames Man page Source code
createNetworkFromGraph Man page Source code
createNetworkFromIgraph Man page Source code
createSubnetwork Man page Source code
createVisualStyle Man page Source code
createWindow Man page Source code
createWindowFromSelection Man page Source code
createWindowFromSelectiondeprecated Man page
createWindowdeprecated Man page
cy2.edge.names Man page Source code
cy2.edge.namesdefunct Man page
cyPlot Man page Source code
cyPlotdefunct Man page
cybrowserClose Man page Source code
cybrowserDialog Man page Source code
cybrowserHide Man page Source code
cybrowserList Man page Source code
cybrowserSend Man page Source code
cybrowserShow Man page Source code
cybrowserVersion Man page Source code
cyrestAPI Man page Source code
cyrestDELETE Man page Source code
cyrestGET Man page Source code
cyrestPOST Man page Source code
cyrestPUT Man page Source code
cytoscapeApiVersions Man page Source code
cytoscapeFreeMemory Man page Source code
cytoscapeMemoryStatus Man page Source code
cytoscapeNumberOfCores Man page Source code
cytoscapePing Man page Source code
cytoscapeVersionInfo Man page Source code
deleteAllNetworks Man page Source code
deleteAllWindows Man page Source code
deleteAllWindowsdeprecated Man page
deleteEdgeAttribute Man page Source code
deleteEdgeAttribute_deprecated Man page
deleteGroup Man page Source code
deleteNetwork Man page Source code
deleteNodeAttribute Man page Source code
deleteNodeAttribute_deprecated Man page
deleteSelectedEdges Man page Source code
deleteSelectedNodes Man page Source code
deleteTableColumn Man page Source code
deleteWindow Man page Source code
deleteWindowdeprecated Man page
demoSimpleGraph Man page Source code
demoSimpleGraphdefunct Man page
diffusionAdvanced Man page Source code
diffusionBasic Man page Source code
disableApp Man page Source code
displayGraph Man page Source code
displayGraphdefunct Man page
dockPanel Man page Source code
eda Man page Source code
eda.names Man page Source code
eda.namesdefunct Man page
edadefunct Man page
edgeNameToEdgeSUID Source code
edgeSUIDToEdgeName Source code
edgeSet2JSON Source code
enableApp Man page Source code
existing.CytoscapeWindow Man page Source code
existing.CytoscapeWindowdeprecated Man page
expandGroup Man page Source code
exportImage Man page Source code
exportNetwork Man page Source code
exportNetworkToNDEx Man page Source code
exportVisualStyles Man page Source code
fitContent Man page Source code
fitSelectedContent Man page Source code
fitSelectedContent_deprecated Man page
floatPanel Man page Source code
getAdjacentEdgeNames Man page Source code
getAdjacentEdgeNamesdefunct Man page
getAllEdgeAttributes Man page Source code
getAllEdgeAttributes_deprecated Man page
getAllEdges Man page Source code
getAllNodeAttributes Man page Source code
getAllNodeAttributes_deprecated Man page
getAllNodes Man page Source code
getAppInformation Man page Source code
getAppStatus Man page Source code
getAppUpdates Man page Source code
getArrowShapes Man page Source code
getAttributeClassNames Man page Source code
getAttributeClassNamesdefunct Man page
getAvailableApps Man page Source code
getBackgroundColorDefault Man page Source code
getCenter Man page Source code
getCenterdeprecated Man page
getCollectionList Man page Source code
getCollectionName Man page Source code
getCollectionNetworks Man page Source code
getCollectionSuid Man page Source code
getCommandNames Man page Source code
getCommandNamesWithinNamespace Man page Source code
getCommandNamesWithinNamespace_deprecated Man page
getCommandNames_deprecated Man page
getDefaultEdgeReverseSelectionColor Man page Source code
getDefaultEdgeReverseSelectionColordefunct Man page
getDefaultNodeReverseSelectionColor Man page Source code
getDefaultNodeReverseSelectionColordefunct Man page
getDirectlyModifiableVisualProperties Man page Source code
getDirectlyModifiableVisualPropertiesdeprecated Man page
getDisabledApps Man page Source code
getEdgeAttribute Man page Source code
getEdgeAttributeNames Man page Source code
getEdgeAttributeNames_deprecated Man page
getEdgeAttribute_deprecated Man page
getEdgeColor Man page Source code
getEdgeCount Man page Source code
getEdgeLineStyle Man page Source code
getEdgeLineWidth Man page Source code
getEdgeProperty Man page Source code
getEdgeSelectionColorDefault Man page Source code
getEdgeTargetArrowShape Man page Source code
getFirstNeighbors Man page Source code
getGraph Man page Source code
getGraphFromCyWindow Man page Source code
getGraphFromCyWindowdeprecated Man page
getGraphdefunct Man page
getGroupInfo Man page Source code
getInstalledApps Man page Source code
getLayoutNameMapping Man page Source code
getLayoutNames Man page Source code
getLayoutPropertyNames Man page Source code
getLayoutPropertyType Man page Source code
getLayoutPropertyValue Man page Source code
getLineStyles Man page Source code
getNetworkCenter Man page Source code
getNetworkCount Man page Source code
getNetworkList Man page Source code
getNetworkNDExId Man page Source code
getNetworkName Man page Source code
getNetworkProperty Man page Source code
getNetworkSuid Man page Source code
getNetworkViewSuid Man page Source code
getNetworkViews Man page Source code
getNetworkZoom Man page Source code
getNodeAttribute Man page Source code
getNodeAttributeNames Man page Source code
getNodeAttributeNames_deprecated Man page
getNodeAttribute_deprecated Man page
getNodeColor Man page Source code
getNodeCount Man page Source code
getNodeHeight Man page Source code
getNodePosition Man page Source code
getNodePositiondefunct Man page
getNodeProperty Man page Source code
getNodeSelectionColorDefault Man page Source code
getNodeShapes Man page Source code
getNodeSize Man page Source code
getNodeWidth Man page Source code
getSelectedEdgeCount Man page Source code
getSelectedEdges Man page Source code
getSelectedNodeCount Man page Source code
getSelectedNodes Man page Source code
getStyleDependencies Man page Source code
getTableColumnNames Man page Source code
getTableColumnTypes Man page Source code
getTableColumns Man page Source code
getTableValue Man page Source code
getUninstalledApps Man page Source code
getViewCoordinates Man page Source code
getViewCoordinatesdefunct Man page
getVisualPropertyDefault Man page Source code
getVisualPropertyNames Man page Source code
getVisualStyleNames Man page Source code
getWindowCount Man page Source code
getWindowCountdeprecated Man page
getWindowID Man page Source code
getWindowIDdeprecated Man page
getWindowList Man page Source code
getWindowListdeprecated Man page
getZoom Man page Source code
getZoomdeprecated Man page
hideAllPanels Man page Source code
hideEdges Man page Source code
hideNodes Man page Source code
hidePanel Man page Source code
hideSelectedEdges Man page Source code
hideSelectedNodes Man page Source code
importNetworkFromFile Man page Source code
importNetworkFromNDEx Man page Source code
initEdgeAttribute Man page Source code
initEdgeAttributedefunct Man page
initNodeAttribute Man page Source code
initNodeAttributedefunct Man page
installApp Man page Source code
invertEdgeSelection Man page Source code
invertNodeSelection Man page Source code
layoutCopycat Man page Source code
layoutNetwork Man page Source code
listGroups Man page Source code
loadTableData Man page Source code
lockNodeDimensions Man page Source code
makeRandomGraph Man page Source code
makeRandomGraphdefunct Man page
makeSimpleGraph Man page Source code
makeSimpleIgraph Man page Source code
mapTableColumn Man page Source code
mapVisualProperty Man page Source code
matchArrowColorToEdge Man page Source code
noa Man page Source code
noa.names Man page Source code
noa.namesdefunct Man page
noadefunct Man page
nodeNameToNodeSUID Source code
nodeSUIDToNodeName Source code
nodeSet2JSON Source code
openAppStore Man page Source code
openSession Man page Source code
ping Man page Source code
ping_deprecated Man page
pluginVersion Man page Source code
pluginVersiondeprecated Man page
predictTimeToDisplayGraph Man page Source code
predictTimeToDisplayGraphdefunct Man page
prepGetQueryArgs Source code
prepPostQueryLists Source code Source code
raiseWindow Man page Source code
raiseWindowdefunct Man page
redraw Man page Source code
redrawdeprecated Man page
renameCytoscapeNetwork Man page Source code
renameCytoscapeNetworkdeprecated Man page
renameNetwork Man page Source code
renameTableColumn Man page Source code
restoreLayout Man page Source code
restoreLayoutdefunct Man page
sNotHexColor Source code
saveImage Man page Source code
saveImagedeprecated Man page
saveLayout Man page Source code
saveLayoutdefunct Man page
saveNetwork Man page Source code
saveNetwork_deprecated Man page
saveSession Man page Source code
selectAllEdges Man page Source code
selectAllNodes Man page Source code
selectEdges Man page Source code
selectEdgesAdjacentToSelectedNodes Man page Source code
selectEdgesConnectedBySelectedNodes Man page Source code
selectEdgesConnectedBySelectedNodes_deprecated Man page
selectEdgesConnectingSelectedNodes Man page Source code
selectFirstNeighbors Man page Source code
selectFirstNeighborsOfSelectedNodes Man page Source code
selectFirstNeighborsOfSelectedNodesdeprecated Man page
selectNodes Man page Source code
sendEdges Man page Source code
sendEdgesdefunct Man page
sendNodes Man page Source code
sendNodesdefunct Man page
setBackgroundColorDefault Man page Source code
setCenter Man page Source code
setCenterdeprecated Man page
setCommandProperties Man page Source code
setCommandPropertiesdefunct Man page
setCurrentNetwork Man page Source code
setCurrentView Man page Source code
setDefaultEdgeReverseSelectionColor Man page Source code
setDefaultEdgeReverseSelectionColordefunct Man page
setDefaultNodeReverseSelectionColor Man page Source code
setDefaultNodeReverseSelectionColordefunct Man page
setEdgeAttributes Man page Source code
setEdgeAttributesdefunct Man page
setEdgeColorBypass Man page Source code
setEdgeColorDefault Man page Source code
setEdgeColorMapping Man page Source code
setEdgeFontFaceBypass Man page Source code
setEdgeFontSizeBypass Man page Source code
setEdgeFontSizeDefault Man page Source code
setEdgeLabelBypass Man page Source code
setEdgeLabelColorBypass Man page Source code
setEdgeLabelMapping Man page Source code
setEdgeLabelOpacityBypass Man page Source code
setEdgeLineStyleBypass Man page Source code
setEdgeLineStyleDefault Man page Source code
setEdgeLineStyleMapping Man page Source code
setEdgeLineWidthBypass Man page Source code
setEdgeLineWidthDefault Man page Source code
setEdgeLineWidthMapping Man page Source code
setEdgeOpacityBypass Man page Source code
setEdgeOpacityMapping Man page Source code
setEdgePropertyBypass Man page Source code
setEdgeSelectionColorDefault Man page Source code
setEdgeSourceArrowColorBypass Man page Source code
setEdgeSourceArrowColorDefault Man page Source code
setEdgeSourceArrowColorMapping Man page Source code
setEdgeSourceArrowMapping Man page Source code
setEdgeSourceArrowShapeBypass Man page Source code
setEdgeSourceArrowShapeDefault Man page Source code
setEdgeTargetArrowColorBypass Man page Source code
setEdgeTargetArrowColorDefault Man page Source code
setEdgeTargetArrowColorMapping Man page Source code
setEdgeTargetArrowMapping Man page Source code
setEdgeTargetArrowShapeBypass Man page Source code
setEdgeTargetArrowShapeDefault Man page Source code
setEdgeTooltipBypass Man page Source code
setEdgeTooltipMapping Man page Source code
setGraph Man page Source code
setGraphdefunct Man page
setLayoutProperties Man page Source code
setNetworkCenterBypass Man page Source code
setNetworkPropertyBypass Man page Source code
setNetworkZoomBypass Man page Source code
setNodeAttributes Man page Source code
setNodeAttributesdefunct Man page
setNodeBorderColorBypass Man page Source code
setNodeBorderColorDefault Man page Source code
setNodeBorderColorMapping Man page Source code
setNodeBorderOpacityBypass Man page Source code
setNodeBorderWidthBypass Man page Source code
setNodeBorderWidthDefault Man page Source code
setNodeBorderWidthMapping Man page Source code
setNodeColorBypass Man page Source code
setNodeColorDefault Man page Source code
setNodeColorMapping Man page Source code
setNodeComboOpacityMapping Man page Source code
setNodeFillOpacityBypass Man page Source code
setNodeFontSizeBypass Man page Source code
setNodeFontSizeDefault Man page Source code
setNodeHeightBypass Man page Source code
setNodeLabelBypass Man page Source code
setNodeLabelColorBypass Man page Source code
setNodeLabelColorDefault Man page Source code
setNodeLabelMapping Man page Source code
setNodeLabelOpacityBypass Man page Source code
setNodeOpacityBypass Man page Source code
setNodePosition Man page Source code
setNodePositiondefunct Man page
setNodePropertyBypass Man page Source code
setNodeSelectionColorDefault Man page Source code
setNodeShapeBypass Man page Source code
setNodeShapeDefault Man page Source code
setNodeShapeMapping Man page Source code
setNodeSizeBypass Man page Source code
setNodeSizeDefault Man page Source code
setNodeSizeMapping Man page Source code
setNodeTooltipMapping Man page Source code
setNodeWidthBypass Man page Source code
setStyleDependencies Man page Source code
setTooltipDismissDelay Man page Source code
setTooltipDismissDelaydefunct Man page
setTooltipInitialDelay Man page Source code
setTooltipInitialDelaydefunct Man page
setVisualPropertyDefault Man page Source code
setVisualStyle Man page Source code
setWindowSize Man page Source code
setWindowSizedefunct Man page
setZoom Man page Source code
setZoom_deprecated Man page
sfn Man page Source code
sfndeprecated Man page
showGraphicsDetails Man page Source code
showGraphicsDetails_deprecated Man page
syncNodeCustomGraphicsSize Man page Source code
tableColumnExists Source code
toggleGraphicsDetails Man page Source code
unhideAll Man page Source code
unhideEdges Man page Source code
unhideNodes Man page Source code
uninstallApp Man page Source code
updateApp Man page Source code
updateNetworkInNDEx Man page Source code
updateStyleDefaults Man page Source code
updateStyleMapping Man page Source code
verifySupportedVersions Source code
RCy3 documentation built on Aug. 13, 2018, 2:01 a.m.