API for RTCGAToolbox
A new tool for exporting TCGA Firehose data

Global functions
CorResult-class Man page
DGEResult-class Man page
FirehoseCGHArray-class Man page
FirehoseData-class Man page
FirehoseGISTIC-class Man page
FirehoseMethylationArray-class Man page
FirehosemRNAArray-class Man page
RTCGASample Man page Man page
RTCGAToolbox Man page
RTCGAToolbox-package Man page
TCGAcols Source code
ansRangeNames Source code
barcodeUUID Source code
biocExtract Man page Source code
checkFileSize Source code
collect_prefixes Source code
collect_suffixes Source code
exportFiles Source code
extractList Source code
fileSelect Source code
findBuild Source code
findCol Source code
findGRangesCols Source code
findSampleCol Source code
find_seqnames_col Source code
find_start_end_cols Source code
find_strands_col Source code
find_width_col Source code
find_with_xfix Source code
getBroadSubtypes Man page Source code
getBuild Source code
getCNGECorrelation Man page Source code
getData Man page
getData,FirehoseData-method Man page
getDataMatrix Source code
getDiffExpressedGenes Man page Source code
getFilenames Source code
getFirehoseAnalyzeDates Man page Source code
getFirehoseData Man page Source code
getFirehoseDatasets Man page Source code
getFirehoseRunningDates Man page Source code
getGISTIC Source code
getGISTICPeaks Man page Source code
getHGBuild Source code
getLinks Source code
getListData Source code
getMethyl Source code
getMutationRate Man page Source code
getReport Man page Source code
getSurvival Man page Source code
hasConsistentRanges Source code
hasExperimentData Source code
hasInfo Source code
hasOldAPI Source code
hasOldGISTIC Source code
hasRangeNames Source code
hg19.ucsc.gene.locations Man page
makeExprMat Source code
makeGRangesFromDataFrame Source code
makeRaggedExperimentFromDataFrame Source code
makeRangedSummarizedExperimentFromDataFrame Source code
makeSummarizedExperimentFromDataFrame Source code
mergeNames Source code
nameClean Source code
omitAdditionalIdx Source code
removeShell Source code
removeStartEnds Source code
samplesAsCols Source code
searchPlatform Source code
selectType Man page
selectType,FirehoseData-method Man page
setHugoRows Source code
show,FirehoseData-method Man page
showResults Man page
showResults,CorResult,CorResult-method Man page
showResults,CorResult-method Man page
showResults,DGEResult,DGEResult-method Man page
showResults,DGEResult-method Man page
standardizeBC Source code
standardizeStrand Source code
standardstrand Source code
stdIDs Source code
unNestList Source code
updateObject,FirehoseData-method Man page
updateObject,FirehoseGISTIC-method Man page
validGRangesCols Source code
validStartEnd Source code
validateNCBI Source code
RTCGAToolbox documentation built on May 2, 2018, 4:10 a.m.