selectType: Accessor function for the FirehoseData object

In RTCGAToolbox: A new tool for exporting TCGA Firehose data

Description

An accessor function for the FirehoseData class. An argument will specify the data type to return See FirehoseData-class for more details.

Usage

selectType(object, dataType)

Arguments

object	A FirehoseData class object
dataType	A data type, see details.

Details

• clinical - Get the clinical data slot

• RNASeqGene - RNASeqGene

• RNASeq2GeneNorm - Normalized

• miRNASeqGene - micro RNA SeqGene

• CNASNP - Copy Number Alteration

• CNVSNP - Copy Number Variation

• CNASeq - Copy Number Alteration

• CNACGH - Copy Number Alteration

• Methylation - Methylation

• mRNAArray - Messenger RNA

• miRNAArray - micro RNA

• RPPAArray - Reverse Phase Protein Array

• Mutation - Mutations

• GISTIC - GISTIC v2 scores and probabilities

Value

The data type element of the FirehoseData object

RTCGAToolbox documentation built on Nov. 8, 2020, 5:34 p.m.