getCNGECorrelation: Perform correlation analysis between gene expression and copy...

In RTCGAToolbox: A new tool for exporting TCGA Firehose data

Description

getCNGECorrelation returns a list that stores the results correlation between gene expression and copy number data.

Usage

getCNGECorrelation(
  dataObject,
  adj.method = "BH",
  adj.pval = 0.05,
  raw.pval = 0.05
)

Arguments

dataObject	This must be FirehoseData object.
adj.method	Raw p value adjustment methods (Default "BH")
adj.pval	Adjusted p value cut off for results table (Default 0.05)
raw.pval	raw p value cut off for results table (Default 0.05)

Value

Returns a list that stores results for each dataset

Examples

data(accmini)

Example output

RTCGAToolbox documentation built on Nov. 8, 2020, 5:34 p.m.