getBroadSubtypes: Download expression-based cancer subtypes from the Broad...
In RTCGAToolbox: A new tool for exporting TCGA Firehose data
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/getBroadSubtypes.R
Description
Obtain the mRNA expression clustering results from the
Broad Institute for a specific cancer code (see getFirehoseDatasets).
Usage
1
getBroadSubtypes(dataset, clust.alg = c("CNMF", "ConsensusPlus"))
Arguments
dataset
A TCGA cancer code, e.g. "OV" for ovarian cancer
clust.alg
The selected cluster algorithm, either "CNMF" or
"ConsensusPlus" (default "CNMF")
Value
A data.frame of cluster and silhouette values
Author(s)
Ludwig Geistlinger
Examples
1
2
co <- getBroadSubtypes("COAD", "CNMF")
head(co)
RTCGAToolbox documentation built on Nov. 8, 2020, 5:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
View source: R/getBroadSubtypes.R
Description
Obtain the mRNA expression clustering results from the Broad Institute for a specific cancer code (see getFirehoseDatasets).
Usage
1 | getBroadSubtypes(dataset, clust.alg = c("CNMF", "ConsensusPlus"))
|
Arguments
dataset |
A TCGA cancer code, e.g. "OV" for ovarian cancer |
clust.alg |
The selected cluster algorithm, either "CNMF" or "ConsensusPlus" (default "CNMF") |
Value
A data.frame of cluster and silhouette values
Author(s)
Ludwig Geistlinger
Examples
1 2 | co <- getBroadSubtypes("COAD", "CNMF")
head(co)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.