FirehoseGISTIC-class: An S4 class to store processed copy number data. (Data...

In RTCGAToolbox: A new tool for exporting TCGA Firehose data

Description

An S4 class to store processed copy number data. (Data processed by using GISTIC2 algorithm)

Usage

## S4 method for signature 'FirehoseGISTIC'
isEmpty(x)

## S4 method for signature 'FirehoseGISTIC'
updateObject(object, ..., verbose = FALSE)

Arguments

x	A FirehoseGISTIC class object
object	A FirehoseGISTIC object
...	additional arguments for updateObject
verbose	logical (default FALSE) whether to print extra messages

Methods (by generic)

• isEmpty: check whether the FirehoseGISTIC object has data in it or not

• updateObject: Update an old FirehoseGISTIC object to the most recent API

Slots

Dataset

Cohort name

AllByGene

A data frame that stores continuous copy number

ThresholdedByGene

A data frame for discrete copy number data

Peaks

A data frame storing GISTIC peak data. See getGISTICPeaks.

RTCGAToolbox documentation built on Nov. 8, 2020, 5:34 p.m.