Files in RTCGAToolbox

A new tool for exporting TCGA Firehose data

NEWS.md README.md acc_sample.R R/RTCGAToolbox.R R/getDiffExpressedGenes.R R/getGISTICPeaks.R R/biocExtract.R R/getFirehoseAnalyzeDates.R R/getSurvival.R R/getMutationRate.R R/utils.R R/getFirehoseData.R R/getLinks.R R/getCNGECorrelation.R R/getBroadSubtypes.R R/getFirehoseRunningDates.R R/selectType.R R/getFirehoseDatasets.R R/data.R R/RTCGAToolbox-Class.R R/getReport.R vignettes/RTCGAToolbox-vignette.Rmd vignettes/RTCGAToolbox-deprecated.Rmd man/getGISTICPeaks.Rd man/selectType.Rd man/FirehoseGISTIC-class.Rd man/getFirehoseDatasets.Rd man/showResults-DGEResult.Rd man/getMutationRate.Rd man/getDiffExpressedGenes.Rd man/getSurvival.Rd man/CorResult-class.Rd man/showResults-CorResult.Rd man/showResults.Rd man/getFirehoseRunningDates.Rd man/getFirehoseAnalyzeDates.Rd man/FirehoseMethylationArray-class.Rd man/DGEResult-class.Rd man/getReport.Rd man/accmini.Rd man/FirehosemRNAArray-class.Rd man/getData.Rd man/RTCGAToolbox.Rd man/FirehoseCGHArray-class.Rd man/getBroadSubtypes.Rd man/hg19.ucsc.gene.locations.Rd man/getFirehoseData.Rd man/biocExtract.Rd man/getCNGECorrelation.Rd man/FirehoseData-class.Rd man/getLinks.Rd inst/doc/RTCGAToolbox-vignette.Rmd inst/doc/RTCGAToolbox-vignette.R inst/doc/RTCGAToolbox-deprecated.Rmd inst/doc/RTCGAToolbox-deprecated.R inst/scripts/acc_sample.R