ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

Package details

AuthorJohannes Griss [aut, cre] (<https://orcid.org/0000-0003-2206-9511>)
Bioconductor views GeneExpression GeneSetEnrichment Proteomics Reactome SystemsBiology Transcriptomics
MaintainerJohannes Griss <johannes.griss@meduniwien.ac.at>
LicenseMIT + file LICENSE
Version1.4.1
URL https://github.com/reactome/ReactomeGSA
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeGSA")

Try the ReactomeGSA package in your browser

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ReactomeGSA documentation built on April 2, 2021, 6 p.m.