README.md

In ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

ReactomeGSA

The ReactomeGSA package is an R client to the Reactome Analysis System. This new analysis system supports multi-species, multi-omics, comparative pathway analyses.

Installation

Bioconductor

The ReactomeGSA package is part of Bioconductor since version 3.10. You can find detailed information on the latest stable version on ReactomeGSA's Bioconductor page.

To install the latest version from Bioconductor use

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeGSA")

Latest Version

Bioconductor is updated every 6 months. You can still get the latest version of the ReactomeGSA package directly from GitHub:

# install devtools if needed
if (!require(devtools)) {
  install.packages("devtools")
}

# install the ReactomeGSA package
if (!require(ReactomeGSA)) {
  install_github("reactome/ReactomeGSA")
}

Help

The complete usage of the package is described in the main vignette.

ReactomeGSA documentation built on April 17, 2021, 6:01 p.m.