get_reactome_data_types: ReactomeGSA supported data types

In ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Description

ReactomeGSA supported data types

Usage

get_reactome_data_types(
  print_types = TRUE,
  return_result = FALSE,
  reactome_url = NULL
)

Arguments

print_types	If set to TRUE (default) a (relatively) nice formatted version of the result is printed.
return_result	If set to TRUE, the result is returned as a data.frame (see below)
reactome_url	URL of the Reactome API Server. Overwrites the URL set in the 'reactome_gsa.url' option. Specific ports can be set using the standard URL specification (for example http://your.service:1234)

Value

A data.frame containing one row per data type with its id and description.

Author(s)

Johannes Griss

See Also

Other Reactome Service functions: get_reactome_methods()

Examples

# retrieve the avialable data types
available_types <- get_reactome_data_types(print_types = FALSE,  return_result = TRUE)

# print all data type ids
available_types$id

# simply print the available methods
get_reactome_data_types()

ReactomeGSA documentation built on April 17, 2021, 6:01 p.m.