API for ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

Global functions
.onAttach Source code
.onLoad Source code
ReactomeAnalysisRequest Man page Source code
ReactomeAnalysisResult Man page
ReactomeAnalysisResult-class Man page
add_dataset Man page
add_dataset,ReactomeAnalysisRequest,DGEList-method Man page
add_dataset,ReactomeAnalysisRequest,EList-method Man page
add_dataset,ReactomeAnalysisRequest,ExpressionSet-method Man page
add_dataset,ReactomeAnalysisRequest,data.frame-method Man page
checkRequestValidity Man page Source code
check_reactome_url Man page Source code
convert_reactome_result Man page Source code
data_frame_as_string Man page Source code
get_fc_for_dataset Man page Source code
get_is_sig_dataset Man page Source code
get_reactome_analysis_result Man page Source code
get_reactome_analysis_status Man page Source code
get_reactome_data_types Man page Source code
get_reactome_methods Man page Source code
get_result Man page
get_result,ReactomeAnalysisResult-method Man page
names,ReactomeAnalysisResult-method Man page
open_reactome Man page
open_reactome,ReactomeAnalysisResult-method Man page
pathways Man page
pathways,ReactomeAnalysisResult-method Man page
perform_reactome_analysis Man page Source code
plot_correlations Man page
plot_correlations,ReactomeAnalysisResult-method Man page
plot_volcano Man page
plot_volcano,ReactomeAnalysisResult-method Man page
print,ReactomeAnalysisRequest-method Man page
print,ReactomeAnalysisResult-method Man page
reactome_links Man page
reactome_links,ReactomeAnalysisResult-method Man page
remove_dataset Man page
remove_dataset,ReactomeAnalysisRequest-method Man page
result_types Man page
result_types,ReactomeAnalysisResult-method Man page
set_method Man page
set_method,ReactomeAnalysisRequest-method Man page
set_parameters Man page
set_parameters,ReactomeAnalysisRequest-method Man page
show,ReactomeAnalysisRequest-method Man page
show,ReactomeAnalysisResult-method Man page
start_reactome_analysis Man page Source code
ReactomeGSA documentation built on Oct. 31, 2019, 3:14 a.m.