Files in ReactomeGSA
Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
NEWS
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/send_request.R
R/gsva_plotting_functions.R
R/get_methods.R
R/plotting_functions.R
R/analysis_request.R
R/analysis_result.R
R/perform_analysis.R
R/analyse_sc_clusters.R
R/on_load.R
R/get_result.R
R/utils.R
inst/CITATION
inst/doc/using-reactomegsa.R
inst/doc/analysing-scRNAseq.html
inst/doc/using-reactomegsa.html
inst/doc/analysing-scRNAseq.R
inst/doc/analysing-scRNAseq.Rmd
inst/doc/using-reactomegsa.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/test_analysis_request.R
vignettes/analysing-scRNAseq.Rmd
vignettes/using-reactomegsa.Rmd
man/print-ReactomeAnalysisResult-method.Rd
man/open_reactome.Rd
man/set_method.Rd
man/get_reactome_methods.Rd
man/check_reactome_url.Rd
man/get_result.Rd
man/convert_reactome_result.Rd
man/plot_gsva_pca-ReactomeAnalysisResult-method.Rd
man/reactome_links.Rd
man/plot_volcano-ReactomeAnalysisResult-method.Rd
man/plot_volcano.Rd
man/plot_correlations.Rd
man/names-ReactomeAnalysisResult-method.Rd
man/is_gsva_result.Rd
man/get_reactome_analysis_result.Rd
man/data_frame_as_string.Rd
man/plot_gsva_heatmap.Rd
man/plot_correlations-ReactomeAnalysisResult-method.Rd
man/get_reactome_data_types.Rd
man/pathways.Rd
man/plot_gsva_pathway-ReactomeAnalysisResult-method.Rd
man/plot_gsva_heatmap-ReactomeAnalysisResult-method.Rd
man/plot_gsva_pca.Rd
man/add_dataset-ReactomeAnalysisRequest-DGEList-method.Rd
man/get_reactome_analysis_status.Rd
man/add_dataset.Rd
man/remove_dataset.Rd
man/result_types.Rd
man/get_fc_for_dataset.Rd
man/ReactomeAnalysisRequest.Rd
man/analyse_sc_clusters-SingleCellExperiment-method.Rd
man/ReactomeAnalysisResult-class.Rd
man/plot_gsva_pathway.Rd
man/add_dataset-ReactomeAnalysisRequest-ExpressionSet-method.Rd
man/get_result-ReactomeAnalysisResult-method.Rd
man/set_parameters.Rd
man/pathways-ReactomeAnalysisResult-method.Rd
man/reactome_links-ReactomeAnalysisResult-method.Rd
man/analyse_sc_clusters-Seurat-method.Rd
man/set_method-ReactomeAnalysisRequest-method.Rd
man/open_reactome-ReactomeAnalysisResult-method.Rd
man/add_dataset-ReactomeAnalysisRequest-matrix-method.Rd
man/add_dataset-ReactomeAnalysisRequest-data.frame-method.Rd
man/set_parameters-ReactomeAnalysisRequest-method.Rd
man/show-ReactomeAnalysisResult-method.Rd
man/checkRequestValidity.Rd
man/remove_dataset-ReactomeAnalysisRequest-method.Rd
man/perform_reactome_analysis.Rd
man/start_reactome_analysis.Rd
man/get_is_sig_dataset.Rd
man/analyse_sc_clusters.Rd
man/show-ReactomeAnalysisRequest-method.Rd
man/result_types-ReactomeAnalysisResult-method.Rd
man/print-ReactomeAnalysisRequest-method.Rd
man/add_dataset-ReactomeAnalysisRequest-EList-method.Rd
