Global functions | |
---|---|
.onAttach | Source code |
.onLoad | Source code |
ReactomeAnalysisRequest | Man page Source code |
ReactomeAnalysisResult | Man page |
ReactomeAnalysisResult-class | Man page |
add_dataset | Man page |
add_dataset,ReactomeAnalysisRequest,DGEList-method | Man page |
add_dataset,ReactomeAnalysisRequest,EList-method | Man page |
add_dataset,ReactomeAnalysisRequest,ExpressionSet-method | Man page |
add_dataset,ReactomeAnalysisRequest,data.frame-method | Man page |
add_dataset,ReactomeAnalysisRequest,matrix-method | Man page |
analyse_sc_clusters | Man page |
analyse_sc_clusters,Seurat-method | Man page |
analyse_sc_clusters,SingleCellExperiment-method | Man page |
checkRequestValidity | Man page Source code |
check_reactome_url | Man page Source code |
convert_reactome_result | Man page Source code |
data_frame_as_string | Man page Source code |
get_fc_for_dataset | Man page Source code |
get_is_sig_dataset | Man page Source code |
get_reactome_analysis_result | Man page Source code |
get_reactome_analysis_status | Man page Source code |
get_reactome_data_types | Man page Source code |
get_reactome_methods | Man page Source code |
get_result | Man page |
get_result,ReactomeAnalysisResult-method | Man page |
is_gsva_result | Man page Source code |
names,ReactomeAnalysisResult-method | Man page |
open_reactome | Man page |
open_reactome,ReactomeAnalysisResult-method | Man page |
pathways | Man page |
pathways,ReactomeAnalysisResult-method | Man page |
perform_reactome_analysis | Man page Source code |
plot_correlations | Man page |
plot_correlations,ReactomeAnalysisResult-method | Man page |
plot_gsva_heatmap | Man page |
plot_gsva_heatmap,ReactomeAnalysisResult-method | Man page |
plot_gsva_pathway | Man page |
plot_gsva_pathway,ReactomeAnalysisResult-method | Man page |
plot_gsva_pca | Man page |
plot_gsva_pca,ReactomeAnalysisResult-method | Man page |
plot_volcano | Man page |
plot_volcano,ReactomeAnalysisResult-method | Man page |
print,ReactomeAnalysisRequest-method | Man page |
print,ReactomeAnalysisResult-method | Man page |
reactome_links | Man page |
reactome_links,ReactomeAnalysisResult-method | Man page |
remove_dataset | Man page |
remove_dataset,ReactomeAnalysisRequest-method | Man page |
result_types | Man page |
result_types,ReactomeAnalysisResult-method | Man page |
set_method | Man page |
set_method,ReactomeAnalysisRequest-method | Man page |
set_parameters | Man page |
set_parameters,ReactomeAnalysisRequest-method | Man page |
show,ReactomeAnalysisRequest-method | Man page |
show,ReactomeAnalysisResult-method | Man page |
start_reactome_analysis | Man page Source code |
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