add_dataset | add_dataset |
add_dataset-ReactomeAnalysisRequest-data.frame-method | add_dataset - data.frame |
add_dataset-ReactomeAnalysisRequest-DGEList-method | add_dataset - DGEList |
add_dataset-ReactomeAnalysisRequest-EList-method | add_dataset - EList |
add_dataset-ReactomeAnalysisRequest-ExpressionSet-method | add_dataset - ExpressionSet |
add_dataset-ReactomeAnalysisRequest-matrix-method | add_dataset - matrix |
analyse_sc_clusters | analyse_sc_clusters |
analyse_sc_clusters-Seurat-method | analyse_sc_clusters - Seurat |
analyse_sc_clusters-SingleCellExperiment-method | analyse_sc_clusters - SingleCellExperiment |
check_reactome_url | check_reactome_url |
checkRequestValidity | Check's if a ReactomeAnalysisRequest object is valid |
convert_reactome_result | Convert the Reactome JSON result to a ReactomeAnalysisResult... |
data_frame_as_string | Converts a data.frame to a string representation |
get_fc_for_dataset | get_fc_for_dataset |
get_is_sig_dataset | get_is_sig_dataset |
get_reactome_analysis_result | Retrieves the result of the submitted analysis using... |
get_reactome_analysis_status | Retrieves the status of the submitted analysis using... |
get_reactome_data_types | ReactomeGSA supported data types |
get_reactome_methods | get_reactome_methods |
get_result | get_result |
get_result-ReactomeAnalysisResult-method | ReactomeAnalysisResult - get_result |
is_gsva_result | is_gsva_result |
names-ReactomeAnalysisResult-method | ReactomeAnalysisResult - names |
open_reactome | open_reactome |
open_reactome-ReactomeAnalysisResult-method | open_reactome - ReactomeAnalysisResult |
pathways | pathways |
pathways-ReactomeAnalysisResult-method | ReactomeAnalysisResult - pathways |
perform_reactome_analysis | Perform a Reactome Analaysis |
plot_correlations | plot_correlations |
plot_correlations-ReactomeAnalysisResult-method | plot_correlations - ReactomeAnalysisResult |
plot_gsva_heatmap | plot_gsva_heatmap |
plot_gsva_heatmap-ReactomeAnalysisResult-method | plot_gsva_heatmap - ReactomeAnalysisResult function |
plot_gsva_pathway | plot_gsva_pathway |
plot_gsva_pathway-ReactomeAnalysisResult-method | ReactomeAnalysisResult - plot_gsva_pathway |
plot_gsva_pca | plot_gsva_pca |
plot_gsva_pca-ReactomeAnalysisResult-method | plot_gsva_pca - ReactomeAnalysisResult |
plot_volcano | plot_volcano |
plot_volcano-ReactomeAnalysisResult-method | ReactomeAnalysisResult - plot_volcano |
print-ReactomeAnalysisRequest-method | print - ReactomeAnalysisRequest |
print-ReactomeAnalysisResult-method | print - ReactomeAnalysisResult |
ReactomeAnalysisRequest | ReactomeAnalysisRequest class |
ReactomeAnalysisResult-class | ReactomeAnalysisResult class |
reactome_links | reactome_links |
reactome_links-ReactomeAnalysisResult-method | ReactomeAnalysisResult - reactome_links |
remove_dataset | remove_dataset |
remove_dataset-ReactomeAnalysisRequest-method | remove_dataset - ReactomeAnalysisRequest |
result_types | result_types |
result_types-ReactomeAnalysisResult-method | ReactomeAnalysisResult - result_types |
set_method | set_method |
set_method-ReactomeAnalysisRequest-method | set_method - ReactomeAnalysisRequest |
set_parameters | set_parameters |
set_parameters-ReactomeAnalysisRequest-method | ReactomeAnalysisRequest - set_parameters |
show-ReactomeAnalysisRequest-method | print - ReactomeAnalysisRequest |
show-ReactomeAnalysisResult-method | show - ReactomeAnalysisResult |
start_reactome_analysis | Start Reactome Analysis |