Files in ReportingTools
Tools for making reports in various formats
NEWS
NAMESPACE
DESCRIPTION
R/HTMLReport-methods.R
R/AllOldClasses.R
R/Link.R
R/HyperGResult-methods.R
R/AllGenerics.R
R/internal.R
R/data.frame-methods.R
R/shinyFunctions.R
R/methods.R
R/DESeqFunctions.R
R/ReportHandlers.R
R/show-methods.R
R/openPage.R
R/accessor-methods.R
R/plotting_functions.R
R/objectToHTML-methods.R
R/AllClasses.R
R/toReportDF-methods.R
R/readReport.R
R/Utilities.R
R/DGEExact-methods.R
R/MArrayLM-methods.R
R/makeDESeqDF.R
R/getDefaultColumnClasses-methods.R
R/DGELRT-methods.R
R/GeneSetCollection-methods.R
R/check.eg.ids.R
R/addReportColumns-methods.R
R/refClasses.R
R/genePagesFunctions.R
R/ReportHandlers-method.R
R/trellis-methods.R
R/publish-methods.R
R/finish-methods.R
R/annotate.genes.R
R/grabScriptAndStyle.R
R/htmlReportRef-methods.R
inst/CITATION
inst/doc/rnaseqAnalysis.Rnw
inst/doc/knitr.Rmd
inst/doc/basicReportingTools.Rnw
inst/doc/shiny.pdf
inst/doc/shiny.R
inst/doc/basicReportingTools.pdf
inst/doc/microarrayAnalysis.Rnw
inst/doc/microarrayAnalysis.R
inst/doc/microarrayAnalysis.pdf
inst/doc/rnaseqAnalysis.pdf
inst/doc/rnaseqAnalysis.R
inst/doc/basicReportingTools.R
inst/doc/knitr.R
inst/doc/knitr.html
inst/doc/shiny.Rnw
inst/doc/jslib/bootstrap.js
inst/doc/jslib/jquery.dataTables.columnFilter.js
inst/doc/jslib/jquery.dataTables.reprise.js
inst/doc/jslib/jquery.dataTables-1.9.3.js
inst/doc/jslib/jquery-1.8.0.min.js
inst/doc/jslib/jquery.dataTables.plugins.js
inst/doc/csslib/bootstrap.css
inst/doc/csslib/reprise.table.bootstrap.css
inst/doc/csslib/images/sort_both.png
inst/doc/csslib/images/sort_asc_disabled.png
inst/doc/csslib/images/sort_desc_disabled.png
inst/doc/csslib/images/sort_asc.png
inst/doc/csslib/images/glyphicons-halflings.png
inst/doc/csslib/images/glyphicons-halflings-white.png
inst/doc/csslib/images/sort_desc.png
inst/doc/figuresknitrReport/knitrReport-72776.png
inst/doc/figuresknitrReport/knitrReport-59999.pdf
inst/doc/figuresknitrReport/knitrReport-72776.pdf
inst/doc/figuresknitrReport/knitrReport-59999.png
inst/examples/testMicro.R
inst/examples/inlineTest.R
inst/examples/posInsertion.R
inst/examples/testRmd.Rmd
inst/examples/publishFlowchart.dia
inst/examples/clobberstart.R
inst/examples/doRMDtest.R
inst/examples/customizeVignette.Rmd
inst/examples/extensibilityTest.R
inst/examples/LinkTest.R
inst/examples/testReadReport.R
inst/examples/knitrformattest.Rmd
inst/examples/testDGEExact.R
inst/examples/indexTest.R
inst/examples/pfamtest.Rmd
inst/examples/marraylmtest.Rmd
inst/examples/publishFlowchart.svg
inst/examples/extensibility.Rmd
inst/examples/testDOM.R
inst/examples/shinyExample/ReadMe.R
inst/examples/shinyExample/ui.R
inst/examples/shinyExample/server.R
inst/examples/shinyExample/shinystuff.Rproj
inst/extdata/jslib/bootstrap.js
inst/extdata/jslib/jquery.dataTables.columnFilter.js
inst/extdata/jslib/jquery.dataTables.reprise.js
inst/extdata/jslib/jquery.dataTables-1.9.3.js
inst/extdata/jslib/jquery-1.8.0.min.js
inst/extdata/jslib/jquery.dataTables.plugins.js
inst/extdata/csslib/reprise.table.css
inst/extdata/csslib/bootstrap.spruce.css
inst/extdata/csslib/bootstrap.css
inst/extdata/csslib/reprise.table.bootstrap.css
inst/extdata/csslib/images/sort_both.png
inst/extdata/csslib/images/sort_asc_disabled.png
inst/extdata/csslib/images/sort_desc_disabled.png
inst/extdata/csslib/images/sort_asc.png
inst/extdata/csslib/images/glyphicons-halflings.png
inst/extdata/csslib/images/glyphicons-halflings-white.png
inst/extdata/csslib/images/sort_desc.png
inst/unitTests/test_HyperGResults.R
inst/unitTests/test_handlerConst.R
inst/unitTests/test_Annotation.R
inst/unitTests/test_knitr.R
inst/unitTests/test_DESeqResults.R
inst/unitTests/test_testObjectCreation.R
inst/unitTests/test_GeneSets.R
inst/unitTests/test_reportmanip.R
inst/unitTests/test_DESeqDataSet.R
inst/unitTests/test_edgeR.R
inst/unitTests/test_MArrayLM.R
inst/unitTests/test_Link.R
inst/unitTests/test_DataFrame.R
build/vignette.rds
tests/runTests.R
vignettes/rnaseqAnalysis.Rnw
vignettes/knitr.Rmd
vignettes/rnaseq5.png
vignettes/html3.png
vignettes/basicReportingTools.Rnw
vignettes/microarray1.png
vignettes/html8.png
vignettes/rnaseq1.png
vignettes/microarray3.png
vignettes/microarray5.png
vignettes/shiny.png
vignettes/microarrayAnalysis.Rnw
vignettes/microarray6.png
vignettes/rnaseq3.png
vignettes/html6.png
vignettes/rnaseq2.png
vignettes/rnaseq4.png
vignettes/html1.png
vignettes/microarray4.png
vignettes/microarray2.png
vignettes/shiny.Rnw
data/mockRnaSeqData.RData
man/CSVFile.Rd
man/validConnection.Rd
man/DataPackage-class.Rd
man/HTMLReport.Rd
man/objectToHTML-methods.Rd
man/custHeaderPanel.Rd
man/HTMLReportRef-class.rd
man/BaseReportType-class.Rd
man/CSVFile-class.Rd
man/makeDESeqDF.Rd
man/Link.Rd
man/filename-methods.Rd
man/ReportHandlers-class.Rd
man/publish-methods.Rd
man/reporting.theme.alternate.Rd
man/DataPackage.Rd
man/reporting.theme.Rd
man/addReportColumns-methods.Rd
man/mockRnaSeqData.Rd
man/readReport.Rd
man/finish-methods.Rd
man/HTMLReport-class.Rd
man/toReportDF-methods.Rd
