Rmagpie
MicroArray Gene-expression-based Program In Error rate estimation

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168
Source code
28
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Rmagpie: MicroArray Gene-expression-based Program In Error rate estimation
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API

API for Rmagpie
MicroArray Gene-expression-based Program In Error rate estimation

Global functions
NSCFeatureSelection Source code
NSCTrainTest Source code
RFESVMFeatureSelection Source code
SVMTrainTest Source code
assessment-class Man page
classifyNewSamples Man page
classifyNewSamples,assessment-method Man page
classifyNewSamples-methods Man page
crossval.errors Source code
divideInFolds Source code
divideNaiveTestFolds Source code
divideNaiveTrainFolds Source code
divideTestFolds Source code
divideTrainFolds Source code
featureSelectionOptions-class Man page
finalClassifier-class Man page
findDJ Source code
findFinalClassifier Man page
findFinalClassifier,assessment-method Man page
findFinalClassifier-methods Man page
findPositionArrow Source code
findPositionsLegend Source code
findPositionsLegendWithFold Source code
frequencyTopGenes Source code
geneSubsets-class Man page
getAlpha Source code
getClassifierName Man page
getClassifierName,assessment-method Man page
getClassifierName<- Man page
getClassifierName<-,assessment-method Man page
getDataset Man page
getDataset,assessment-method Man page
getDataset-methods Man page
getDataset<- Man page
getDataset<-,assessment-method Man page
getDataset<--methods Man page
getFeatureSelectionMethod,assessment-method Man page
getFeatureSelectionOptions Man page
getFeatureSelectionOptions,assessment-method Man page
getFeatureSelectionOptions-methods Man page
getFeatureSelectionOptions<- Man page
getFeatureSelectionOptions<-,assessment-method Man page
getFeatureSelectionOptions<--methods Man page
getFinalClassifier Man page
getFinalClassifier,assessment-method Man page
getFinalClassifier-methods Man page
getGenesFromBestToWorst Man page
getGenesFromBestToWorst,finalClassifier-method Man page
getMaxSubsetSize Man page
getMaxSubsetSize,geneSubsets-method Man page
getMaxSubsetSize<- Man page
getMaxSubsetSize<-,geneSubsets-method Man page
getModels Man page
getModels,finalClassifier-method Man page
getNoFolds1stLayer Man page
getNoFolds1stLayer,assessment-method Man page
getNoFolds1stLayer<- Man page
getNoFolds1stLayer<-,assessment-method Man page
getNoFolds2ndLayer Man page
getNoFolds2ndLayer,assessment-method Man page
getNoFolds2ndLayer<- Man page
getNoFolds2ndLayer<-,assessment-method Man page
getNoModels Man page
getNoModels,geneSubsets-method Man page
getNoOfRepeats Man page
getNoOfRepeats,assessment-method Man page
getNoOfRepeats<- Man page
getNoOfRepeats<-,assessment-method Man page
getNoThresholds Man page
getNoThresholds,thresholds-method Man page
getNoThresholds<- Man page
getNoThresholds<-,thresholds-method Man page
getOptionValues Man page
getOptionValues,featureSelectionOptions-method Man page
getOptionValues,thresholds-method Man page
getOptionValues<- Man page
getOptionValues<-,thresholds-method Man page
getResult1LayerCV Man page
getResult1LayerCV,assessment-method Man page
getResult1LayerCV<- Man page
getResult1LayerCV<-,assessment-method Man page
getResult2LayerCV Man page
getResult2LayerCV,assessment-method Man page
getResult2LayerCV<- Man page
getResult2LayerCV<-,assessment-method Man page
getResults Man page
getResults,assessment-method Man page
getResults-methods Man page
getSpeed Man page
getSpeed,geneSubsets-method Man page
getSpeed<- Man page
getSpeed<-,geneSubsets-method Man page
getSubsetsSizes Man page
getSubsetsSizes,geneSubsets-method Man page
getSubsetsSizes<- Man page
getSubsetsSizes<-,geneSubsets-method Man page
getSvmKernel Man page
getSvmKernel,assessment-method Man page
getSvmKernel<- Man page
getSvmKernel<-,assessment-method Man page
getTypeFoldCreation Man page
getTypeFoldCreation,assessment-method Man page
getTypeFoldCreation<- Man page
getTypeFoldCreation<-,assessment-method Man page
getW Source code
getY Source code
imageGene Source code
initialize,assessment-method Man page
initialize,geneSubsets-method Man page
initialize,thresholds-method Man page
linear.feasel Source code
loadData Source code
noFvec Source code
oneLayerExtCV Source code
orderFeatures Source code
performACvPerModelWithNSCAndNSC Source code
performACvPerModelWithSVMAndRFE Source code
performAValidation Source code
plotErrorRatePerFold Source code
plotErrors Source code
plotErrorsFoldTwoLayerCV Man page
plotErrorsFoldTwoLayerCV,assessment-method Man page
plotErrorsFoldTwoLayerCV-methods Man page
plotErrorsRepeatedOneLayerCV Man page
plotErrorsRepeatedOneLayerCV,assessment-method Man page
plotErrorsRepeatedOneLayerCV-methods Man page
plotErrorsSummaryOneLayerCV Man page
plotErrorsSummaryOneLayerCV,assessment-method Man page
plotErrorsSummaryOneLayerCV-methods Man page
printImageGenes Source code
rankedGenesImg Man page
rankedGenesImg,assessment-method Man page
rankedGenesImg-methods Man page
rfe.cv Source code
rfe.fit Source code
rfe.predict Source code
runOneLayerExtCV Man page
runOneLayerExtCV,assessment-method Man page
runOneLayerExtCV-methods Man page
runTwoLayerExtCV Man page
runTwoLayerExtCV,assessment-method Man page
runTwoLayerExtCV-methods Man page
show,assessment-method Man page
show,cvErrorRate-method Man page
show,cvErrorRate2ndLayer-method Man page
show,errorRate1stLayerCV-method Man page
show,errorRate2ndLayerCV-method Man page
show,finalClassifier-method Man page
show,frequencyGenes-method Man page
show,frequencyTopGenePerOneModel-method Man page
show,geneSubsets-method Man page
show,result2LayerCV-method Man page
show,resultRepeated1LayerCV-method Man page
show,resultRepeated2LayerCV-method Man page
show,resultSingle1LayerCV-method Man page
show,selectedGenes-method Man page
show,selectedGenes1stLayerCV-method Man page
show,selectedGenes2ndLayerCV-method Man page
show,selectedGenesPerOneOption-method Man page
show,thresholds-method Man page
svm.weight Source code
test.nonDim0NumericMatrix Source code
test.nonLength0 Source code
test.nonLength0Vector Source code
test.oneElement Source code
thresholds-class Man page
twoLayerExtCV Source code
vV70genes Man page
Rmagpie documentation built on Nov. 8, 2020, 11:09 p.m.

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