vV70genes: vV70genes: van't Veer et al. 70 best genes in an object of...

In Rmagpie: MicroArray Gene-expression-based Program In Error rate estimation

Description

Gene Expression values and output classes of the 70 best genes selected by van't Veer et al. (cf. references) on 78 patients in ‘Gene expression profiling predicts clinical outcome of breast cancer’.

Usage

data('vV70genesDataset')

Format

lksdjskh

References

L.J. van 't Veer LJ, H. Dai, M.J. van de Vijver, Y.D. He, A.A. Hart, M. Mao, H.L. Peterse,K. van der Kooy, M.J. Marton, A.T. Witteveen, G.J. Schreiber, R.M. Kerkhoven, C. Roberts, P.S. Linsley, R. Bernards, S.H. Friend, ‘Gene expression profiling predicts clinical outcome of breast cancer’, in Nature. 2002 Jan 31;415(6871):484-5.

Examples

data('vV70genesDataset')
vV70genes

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

ExpressionSet (storageMode: lockedEnvironment)
assayData: 70 features, 78 samples 
  element names: exprs 
protocolData: none
phenoData
  sampleNames: V1 V2 ... V78 (78 total)
  varLabels: type
  varMetadata: labelDescription
featureData: none
experimentData: use 'experimentData(object)'
Annotation:  

Rmagpie documentation built on Nov. 8, 2020, 11:09 p.m.