rankedGenesImg-methods: rankedGenesImg Method to plot the genes according to their...

In Rmagpie: MicroArray Gene-expression-based Program In Error rate estimation

Description

Generate an image per value of option representing the features (on dot per feature). The color of the dot depends on the frequency of the feature in for the given value of option (number of genes or threshold).

Arguments

object	Object of class assessment. Object assessment of interest.
storagePath	character. URL where the image must be stored.

Methods

object = "assessment"

The method is only applicable on objects of class assessment.

Examples

## Not run: 
data('vV70genesDataset')

expeOfInterest <- new("assessment", dataset=vV70genes,
                                   noFolds1stLayer=3,
                                   noFolds2ndLayer=2,
                                   classifierName="svm",
                                   typeFoldCreation="original",
                                   svmKernel="linear",
                                   noOfRepeat=10,
                                   featureSelectionOptions=new("geneSubsets", optionValues=c(1,2,3,4,5,6)))

expeOfInterest <- runOneLayerExtCV(expeOfInterest)

rankedGenesImg(expeOfInterest, storagePath='myPath')

## End(Not run)

Rmagpie documentation built on Nov. 8, 2020, 11:09 p.m.