API for Rsubread
Mapping, quantification and variant analysis of sequencing data
| Global functions | |
|---|---|
| .averaging_transform | Source code |
| .cellCounts_try_cellbarcode | Source code |
| .check_and_NormPath | Source code |
| .check_string_param | Source code |
| .convert.sample_index.id.to.seq | Source code |
| .dataURL | Source code |
| .findCommonVariants_inner | Source code |
| .find_best_cellbarcode | Source code |
| .flatten.and.numeric | Source code |
| .index.names.to.sheet | Source code |
| .is.64bit.system | Source code |
| .load.delete.summary | Source code |
| .mySGT | Source code |
| .mySGTsorted | Source code |
| .one.convert.sample_index.id.to.seq | Source code |
| .retrieve.tmp.parameters | Source code |
| .rstest | Source code |
| .simFragments | Source code |
| .simple.Good.Turing.Freq | Source code |
| .smoothed | Source code |
| .stop_quietly | Source code Source code |
| .write.tmp.parameters | Source code |
| RsubreadUsersGuide | Man page Source code |
| align | Man page Source code |
| atgcContent | Man page Source code |
| buildindex | Man page Source code |
| cellCounts | Man page |
| detectionCall | Man page Source code |
| detectionCallAnnotation | Man page Source code |
| exactSNP | Man page Source code |
| featureCounts | Man page Source code |
| findCommonVariants | Man page Source code |
| flattenGTF | Man page Source code |
| getInBuiltAnnotation | Man page Source code |
| processExons | Man page Source code |
| promoterRegions | Man page Source code |
| propmapped | Man page Source code |
| qualityScores | Man page Source code |
| removeDupReads | Man page Source code |
| repair | Man page Source code |
| sam2bed | Man page Source code |
| scanFasta | Man page Source code |
| simReads | Man page Source code |
| subjunc | Man page Source code |
| sublong | Man page Source code |
| txUnique | Man page Source code |
