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R/getP2.R
In SPIA: Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Defines functions
getP2
Documented in
getP2
getP2<-function(pG,combine="fisher"){
#given a pG returns two equal p-values such as combfunc(p1,p2)=pG
if(combine=="fisher"){
ch=qchisq(pG,4,lower.tail = FALSE)
return(sqrt(exp(-ch/2)))
}
if(combine=="norminv"){
return(pnorm(qnorm(pG)*sqrt(2)/2))
}
}
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SPIA documentation built on Nov. 8, 2020, 5:44 p.m.
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Defines functions getP2
Documented in getP2
getP2<-function(pG,combine="fisher"){
#given a pG returns two equal p-values such as combfunc(p1,p2)=pG
if(combine=="fisher"){
ch=qchisq(pG,4,lower.tail = FALSE)
return(sqrt(exp(-ch/2)))
}
if(combine=="norminv"){
return(pnorm(qnorm(pG)*sqrt(2)/2))
}
}
Try the SPIA package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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