fn_gene_miRNA_F_test: Perform F test for gene-miRNA elastic net model

In SPONGE: Sparse Partial Correlations On Gene Expression

Description

Perform F test for gene-miRNA elastic net model

Usage

fn_gene_miRNA_F_test(g_expr, m_expr, model, p.adj.threshold = NULL)

Arguments

g_expr	A gene expression matrix with samples in rows and genes in columns
m_expr	A miRNA expression matrix with samples in rows and genes in columns. Sample number and order has to agree with above gene expression matrix
model	A nested elastic net model to be tested
p.adj.threshold	Threshold for FDR corrected p-value

Value

return data frame with miRNA, fstat and adjusted p.value (BH).

SPONGE documentation built on Nov. 8, 2020, 5:39 p.m.