sponge_plot_network: Plot a sponge network

In SPONGE: Sparse Partial Correlations On Gene Expression

Description

Plot a sponge network

Usage

sponge_plot_network(sponge_result, mir_data,
  layout = "layout.fruchterman.reingold", force.directed = FALSE, ...)

Arguments

sponge_result	ceRNA interactions as produced by the sponge method.
mir_data	miRNA interactions as produced by sponge_gene_miRNA_interaction_filter
layout	one of the layout methods supported in the visNetwork package
force.directed	whether to produce a force directed network, gets slow for large networks
...	further params for sponge_network

Value

shows a plot

Examples

sponge_plot_network(ceRNA_interactions, mir_interactions)

SPONGE documentation built on Nov. 8, 2020, 5:39 p.m.