API for SWATH2stats
Transform and Filter SWATH Data for Statistical Packages
| Global functions | |
|---|---|
| JPP_update | Man page Source code |
| MSstats_data | Man page |
| OpenSWATH_data | Man page |
| Spyogenes | Man page |
| Study_design | Man page |
| add_genesymbol | Man page Source code |
| assess_decoy_rate | Man page Source code |
| assess_fdr_byrun | Man page Source code |
| assess_fdr_overall | Man page Source code |
| convert4MSstats | Man page Source code |
| convert4PECA | Man page Source code |
| convert4aLFQ | Man page Source code |
| convert4mapDIA | Man page Source code |
| convert4pythonscript | Man page Source code |
| convert_protein_ids | Man page Source code |
| count_analytes | Man page Source code |
| data | Man page |
| disaggregate | Man page Source code |
| filter_all_peptides | Man page Source code |
| filter_mscore | Man page Source code |
| filter_mscore_condition | Man page Source code |
| filter_mscore_fdr | Man page Source code |
| filter_mscore_freqobs | Man page Source code |
| filter_on_max_peptides | Man page Source code |
| filter_on_min_peptides | Man page Source code |
| filter_proteotypic_peptides | Man page Source code |
| import_data | Man page Source code |
| load_mart | Man page Source code |
| mscore4assayfdr | Man page Source code |
| mscore4pepfdr | Man page Source code |
| mscore4protfdr | Man page Source code |
| plot.fdr_cube | Man page Source code |
| plot.fdr_table | Man page Source code |
| plot_correlation_between_samples | Man page Source code |
| plot_variation | Man page Source code |
| plot_variation_vs_total | Man page Source code |
| reduce_OpenSWATH_output | Man page Source code |
| removeDecoyProteins | Man page Source code |
| rmDecoyProt | Man page Source code |
| sample_annotation | Man page Source code |
| transform_MSstats_OpenSWATH | Man page Source code |
| unifyProteinGroupLabels | Man page Source code |
| validate_columns | Man page Source code |
| write_matrix_peptides | Man page Source code |
| write_matrix_proteins | Man page Source code |
