This functions counts all proteins that are supported by peptides (including non proteo-typic peptides). All peptides (incl. non proteotypic peptides are selected. For the proteins supproted by proteotypic peptide the "1/" in front of the identifier is removed to facilitate further data processing.
A data frame containing SWATH data.
Returns a data frame with the data from both proteotypic and non-proteotypic peptides.
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