unifyProteinGroupLabels: Unify the protein group labels.
In SWATH2stats: Transform and Filter SWATH Data for Statistical Packages

Description Usage Arguments Value Author(s) Examples

View source: R/unifyProteinGroupLabels.R

Unify the protein group labels (2/ProteinA/ProteinB and 2/ProteinB/ProteinA) to one common label (e.g. 2/ProteinA/ProteinB)

1	unifyProteinGroupLabels(data, column = "ProteinName")

`data`	A data frame containing SWATH data.
`column`	Which column to use for unifying the protein group identifiers.

Returns a data frame with the unififed protein labels.

Moritz Heusel

 data("OpenSWATH_data", package="SWATH2stats")
 data("Study_design", package="SWATH2stats")
 data <- sample_annotation(OpenSWATH_data, Study_design)
 data.filtered.decoy <- filter_mscore(data, 0.01)
 data.unified <- unifyProteinGroupLabels(data.filtered.decoy)