This package is intended to transform extracted SWATH/DIA data from the OpenSWATH or other (e.g. Spectronaut) software into a format directly-usable by statistics packages (e.g. mapDIA, PECA, MSstats) while performing filtering, annotation and FDR assessment if necessary.

Analyzing SWATH/DIA data

How to extract SWATH/DIA data before using SWATH2stats with OpenSWATH can be found here:


SWATH2stats is a Bioconductor package. Go to to see all information related to installation. Importantly there exists both a release and development version.


Please feel free to comment and post issues or pull requests on github.


For the publication describing this package, see:


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SWATH2stats documentation built on April 17, 2021, 6:01 p.m.