ShortRead: FASTQ input and manipulation

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

Package details

AuthorMartin Morgan, Michael Lawrence, Simon Anders
Bioconductor views DataImport QualityControl Sequencing
MaintainerBioconductor Package Maintainer <[email protected]>
Package repositoryView on Bioconductor
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ShortRead documentation built on Oct. 31, 2019, 3:27 a.m.