MAQMapQA-class: (Legacy) Quality assessment summaries from MAQ map files

Description Objects from the Class Slots Extends Methods Author(s) See Also Examples

Description

This class contains a list-like structure with summary descriptions derived from visiting one or more MAQMap files.

Objects from the Class

Objects of the class are usually produced by a qa method.

Slots

.srlist:

Object of class "list", containing data frames or lists of data frames summarizing the results of qa.

Extends

Class "SRList", directly. Class ".QA", directly. Class ".SRUtil", by class "SRList", distance 2. Class ".ShortReadBase", by class ".QA", distance 2.

Methods

Accessor methods are inherited from the SRList class.

report

signature(x="MAQMapQA", ..., dest=tempfile(), type="html"): produces an html file summarizing the QA results.

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>

See Also

qa.

Examples

1
showClass("MAQMapQA")

ShortRead documentation built on Nov. 8, 2020, 8:02 p.m.