alphabetScore: Efficiently calculate the sum of quality scores across bases

Description Usage Arguments Value Author(s)

Description

This generic takes a QualityScore or PhredQuality object and calculates, for each read, the sum of the encoded nucleotide probabilities.

Usage

1
alphabetScore(object, ...)

Arguments

object

An object of class QualityScore.

...

Additional arguments, currently unused.

Value

A vector of numeric values of length equal to the length of object.

Author(s)

Martin Morgan <[email protected]>


ShortRead documentation built on Nov. 1, 2018, 2:08 a.m.