alphabetScore: Efficiently calculate the sum of quality scores across bases
In ShortRead: FASTQ input and manipulation
Description
Usage
Arguments
Value
Author(s)
Description
This generic takes a QualityScore or
PhredQuality object and calculates, for each read, the sum of
the encoded nucleotide probabilities.
Usage
1
alphabetScore(object, ...)
Arguments
object
An object of class QualityScore.
...
Additional arguments, currently unused.
Value
A vector of numeric values of length equal to the length of
object.
Author(s)
Martin Morgan <mtmorgan@fhcrc.org>
ShortRead documentation built on Nov. 8, 2020, 8:02 p.m.
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Description Usage Arguments Value Author(s)
Description
This generic takes a QualityScore or
PhredQuality object and calculates, for each read, the sum of
the encoded nucleotide probabilities.
Usage
1 | alphabetScore(object, ...)
|
Arguments
object |
An object of class |
... |
Additional arguments, currently unused. |
Value
A vector of numeric values of length equal to the length of
object.
Author(s)
Martin Morgan <mtmorgan@fhcrc.org>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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