(Legacy) Read short reads and their quality scores into R representations
readBaseQuality reads all base call files in a directory
dirPath whose file name matches
seqPattern and all quality
score files whose name matches
prbPattern, returning a compact
internal representation of the sequences, and quality scores in the files.
Methods read all files into a single R object.
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A character vector (or other object; see methods defined on this generic) giving the directory path (relative or absolute) of files to be input.
The type of file to be parsed. Supported types include:
Additional arguments, perhaps used by methods.
A single R object (e.g.,
sequences and qualities of all files in
prbPattern respectively. There is no
guarantee of order in which files are read.
Patrick Aboyoun <email@example.com>
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