ShortRead-package: FASTQ input and manipulation.

Description Details Author(s)


This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.


See packageDescription('ShortRead')


Maintainer: Martin Morgan <[email protected]>

ShortRead documentation built on Nov. 1, 2018, 2:08 a.m.