SpatialExperiment: S4 Class for Spatial Experiments handling

Defines S4 classes for storing data for spatial experiments. Main examples are reported by using seqFISH and 10x-Visium Spatial Gene Expression data. This includes specialized methods for storing, retrieving spatial coordinates, 10x dedicated parameters and their handling.

10x-Visum Spatial Data Analysis seqFISH Spatial Data Workflow

Vignettes Man pages API and functions Files

Package details
Author	Dario Righelli [aut, cre], Davide Risso [aut]
Bioconductor views	DataImport DataRepresentation ImmunoOncology Infrastructure SingleCell
Maintainer	Dario Righelli <dario.righelli@gmail.com>
License	GPL-3
Version	1.0.0
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SpatialExperiment")`