SwathXtend: SWATH extended library generation and satistical data analysis

It contains utility functions for integrating spectral libraries for SWATH and statistical data analysis for SWATH generated data.

AuthorJ WU and D Pascovici
Date of publicationNone
MaintainerJemma Wu <jwu@proteome.org.au>
LicenseGPL-2
Version1.2.0

View on Bioconductor

Functions

applyttest Man page
applyttestPep Man page
buildSpectraLibPair Man page
canonicalFormat Man page
checkQuality Man page
cleanLib Man page
ionCorGS Man page
medianNorm Man page
mlr Man page
mlrGroup Man page
mlrrep Man page
outputLib Man page
plotAll Man page
plotDensities Man page
plotErrorBarsLines Man page
plotRelativeDensities Man page
plotRIICor Man page
plotRTCor Man page
plotRTResd Man page
readLibFile Man page

Files

SwathXtend/DESCRIPTION
SwathXtend/NAMESPACE
SwathXtend/R
SwathXtend/R/alignRTbyHydro.R SwathXtend/R/applyttest.R SwathXtend/R/applyttestPep.R SwathXtend/R/buildSpectraLibPair.R SwathXtend/R/canonicalFormat.R SwathXtend/R/checkQuality.R SwathXtend/R/cleanLib.R SwathXtend/R/computeRIICor.R SwathXtend/R/computeRTCor.R SwathXtend/R/consolidateAccession.R SwathXtend/R/convertAACount.R SwathXtend/R/getRTrain.R SwathXtend/R/isMissCleavaged.R SwathXtend/R/libraryFormat.R SwathXtend/R/medianNorm.R SwathXtend/R/mlr.R SwathXtend/R/mlrGroup.R SwathXtend/R/mlrrep.R SwathXtend/R/normalise.R SwathXtend/R/openSwathFormat.R SwathXtend/R/outputLib.R SwathXtend/R/parseAccession.R SwathXtend/R/plotAll.R SwathXtend/R/plotDensities.R SwathXtend/R/plotErrorBarsLines.R SwathXtend/R/plotRIICor.R SwathXtend/R/plotRTCor.R SwathXtend/R/plotRTResd.R SwathXtend/R/plotRelativeDensities.R SwathXtend/R/plotStats.R SwathXtend/R/predictRT.R SwathXtend/R/proteinOverlap.R SwathXtend/R/readLibFile.R SwathXtend/R/selectModel.R SwathXtend/R/splitData.R SwathXtend/R/splitLib.R
SwathXtend/build
SwathXtend/build/vignette.rds
SwathXtend/data
SwathXtend/data/ionCorGS.rda
SwathXtend/inst
SwathXtend/inst/doc
SwathXtend/inst/doc/SwathXtend_vignette.R
SwathXtend/inst/doc/SwathXtend_vignette.Rnw
SwathXtend/inst/doc/SwathXtend_vignette.pdf
SwathXtend/inst/files
SwathXtend/inst/files/Lib1.txt
SwathXtend/inst/files/Lib2.txt
SwathXtend/inst/files/Lib3.txt
SwathXtend/inst/files/hydroIndex.txt
SwathXtend/man
SwathXtend/man/applyttest.Rd SwathXtend/man/applyttestPep.Rd SwathXtend/man/buildSpectraLibPair.Rd SwathXtend/man/canonicalFormat.Rd SwathXtend/man/checkQuality.Rd SwathXtend/man/cleanLib.Rd SwathXtend/man/ionCorGS.Rd SwathXtend/man/medianNorm.Rd SwathXtend/man/mlr.Rd SwathXtend/man/mlrGroup.Rd SwathXtend/man/mlrrep.Rd SwathXtend/man/outputLib.Rd SwathXtend/man/plotAll.Rd SwathXtend/man/plotDensities.Rd SwathXtend/man/plotErrorBarsLines.Rd SwathXtend/man/plotRIICor.Rd SwathXtend/man/plotRTCor.Rd SwathXtend/man/plotRTResd.Rd SwathXtend/man/plotRelativeDensities.Rd SwathXtend/man/readLibFile.Rd
SwathXtend/vignettes
SwathXtend/vignettes/SwathXtend_vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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