SwathXtend: SWATH extended library generation and satistical data analysis

It contains utility functions for integrating spectral libraries for SWATH and statistical data analysis for SWATH generated data.

AuthorJ WU and D Pascovici
Date of publicationNone
MaintainerJemma Wu <jwu@proteome.org.au>
LicenseGPL-2
Version1.2.0

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Files in this package

SwathXtend/DESCRIPTION
SwathXtend/NAMESPACE
SwathXtend/R
SwathXtend/R/alignRTbyHydro.R SwathXtend/R/applyttest.R SwathXtend/R/applyttestPep.R SwathXtend/R/buildSpectraLibPair.R SwathXtend/R/canonicalFormat.R SwathXtend/R/checkQuality.R SwathXtend/R/cleanLib.R SwathXtend/R/computeRIICor.R SwathXtend/R/computeRTCor.R SwathXtend/R/consolidateAccession.R SwathXtend/R/convertAACount.R SwathXtend/R/getRTrain.R SwathXtend/R/isMissCleavaged.R SwathXtend/R/libraryFormat.R SwathXtend/R/medianNorm.R SwathXtend/R/mlr.R SwathXtend/R/mlrGroup.R SwathXtend/R/mlrrep.R SwathXtend/R/normalise.R SwathXtend/R/openSwathFormat.R SwathXtend/R/outputLib.R SwathXtend/R/parseAccession.R SwathXtend/R/plotAll.R SwathXtend/R/plotDensities.R SwathXtend/R/plotErrorBarsLines.R SwathXtend/R/plotRIICor.R SwathXtend/R/plotRTCor.R SwathXtend/R/plotRTResd.R SwathXtend/R/plotRelativeDensities.R SwathXtend/R/plotStats.R SwathXtend/R/predictRT.R SwathXtend/R/proteinOverlap.R SwathXtend/R/readLibFile.R SwathXtend/R/selectModel.R SwathXtend/R/splitData.R SwathXtend/R/splitLib.R
SwathXtend/build
SwathXtend/build/vignette.rds
SwathXtend/data
SwathXtend/data/ionCorGS.rda
SwathXtend/inst
SwathXtend/inst/doc
SwathXtend/inst/doc/SwathXtend_vignette.R
SwathXtend/inst/doc/SwathXtend_vignette.Rnw
SwathXtend/inst/doc/SwathXtend_vignette.pdf
SwathXtend/inst/files
SwathXtend/inst/files/Lib1.txt
SwathXtend/inst/files/Lib2.txt
SwathXtend/inst/files/Lib3.txt
SwathXtend/inst/files/hydroIndex.txt
SwathXtend/man
SwathXtend/man/applyttest.Rd SwathXtend/man/applyttestPep.Rd SwathXtend/man/buildSpectraLibPair.Rd SwathXtend/man/canonicalFormat.Rd SwathXtend/man/checkQuality.Rd SwathXtend/man/cleanLib.Rd SwathXtend/man/ionCorGS.Rd SwathXtend/man/medianNorm.Rd SwathXtend/man/mlr.Rd SwathXtend/man/mlrGroup.Rd SwathXtend/man/mlrrep.Rd SwathXtend/man/outputLib.Rd SwathXtend/man/plotAll.Rd SwathXtend/man/plotDensities.Rd SwathXtend/man/plotErrorBarsLines.Rd SwathXtend/man/plotRIICor.Rd SwathXtend/man/plotRTCor.Rd SwathXtend/man/plotRTResd.Rd SwathXtend/man/plotRelativeDensities.Rd SwathXtend/man/readLibFile.Rd
SwathXtend/vignettes
SwathXtend/vignettes/SwathXtend_vignette.Rnw

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