Files in SwathXtend
SWATH extended library generation and statistical data analysis
NAMESPACE
DESCRIPTION
build/vignette.rds
data/ionCorGS.rda
R/plotRelativeDensities.R
R/parseAccession.R
R/mlr.R
R/plotRTCor.R
R/libraryFormat.R
R/plotRTResd.R
R/selectModel.R
R/proteinOverlap.R
R/canonicalFormat.R
R/mlrrep.R
R/splitLib.R
R/readLibFile.R
R/convertAACount.R
R/checkQuality.R
R/openSwathFormat.R
R/reliabilityCheckSwath.R
R/outputLib.R
R/alignRTbyHydro.R
R/applyttest.R
R/plotErrorBarsLines.R
R/getRTrain.R
R/consolidateAccession.R
R/plotAll.R
R/plotDensities.R
R/computeRTCor.R
R/mlrGroup.R
R/fdrFunctions.R
R/medianNorm.R
R/plotStats.R
R/applyttestPep.R
R/computeRIICor.R
R/reliabilityCheckLibray.R
R/normalise.R
R/buildSpectraLibPair.R
R/isMissCleavaged.R
R/cleanLib.R
R/splitData.R
R/plotRIICor.R
R/predictRT.R
vignettes/SwathXtend_vignette.Rnw
man/plotRIICor.Rd
man/reliabilityCheckSwath.Rd
man/coverage.Rd
man/ionCorGS.Rd
man/plotRelativeDensities.Rd
man/mlrrep.Rd
man/applyttestPep.Rd
man/plotAll.Rd
man/quantification.accuracy.Rd
man/mlrGroup.Rd
man/fdr.crit.Rd
man/plotErrorBarsLines.Rd
man/getFdrBins.Rd
man/buildSpectraLibPair.Rd
man/readLibFile.Rd
man/reliabilityCheckLibrary.Rd
man/outputLib.Rd
man/applyttest.Rd
man/plotDensities.Rd
man/canonicalFormat.Rd
man/plotRTResd.Rd
man/checkQuality.Rd
man/swath.means.Rd
man/cleanLib.Rd
man/cv.Rd
man/medianNorm.Rd
man/plotRTCor.Rd
man/mlr.Rd
inst/doc/SwathXtend_vignette.pdf
inst/doc/SwathXtend_vignette.R
inst/doc/SwathXtend_vignette.Rnw
inst/files/Swath_result_Lib2_3.xlsx
inst/files/Lib3.txt
inst/files/Swath_result_seed.xlsx
inst/files/Swath_result_ext.xlsx
inst/files/Lib2.txt
inst/files/Lib2_3.txt
inst/files/Swath_result_Lib2.xlsx
inst/files/hydroIndex.txt
inst/files/Lib1.txt
