plotRTCor: Plot for retention time correlation of two libraries

In SwathXtend: SWATH extended library generation and statistical data analysis

Description

Plot for retention time correlation of two libraries

Usage

plotRTCor(dat1, dat2, label1, label2, nomod = FALSE)

Arguments

dat1	A data frame containing the first spectrum library
dat2	A data frame containing the second spectrum library
label1	a character string representing the x axis label for plotting
label2	a character string representing the y axis label for plotting
nomod	a logic value, representing if the modified peptides and its fragment ions will be removed. FALSE (default) means not removing.

Value

retentiont time correlation coefficient

Examples

libfiles <- paste(system.file("files",package="SwathXtend"),
   c("Lib2.txt","Lib3.txt"),sep="/")
datBaseLib <- readLibFile(libfiles[1])
datExtLib <- readLibFile(libfiles[2])
plotRTCor(datBaseLib, datExtLib, "Lib2", "Lib5")

SwathXtend documentation built on Nov. 8, 2020, 6:42 p.m.