mlrGroup: Function to do mlr normalization for a matrix group

In SwathXtend: SWATH extended library generation and statistical data analysis

Description

Do mlr normalization separately for each set of replicates first, then normalize the resulting matrix

Usage

mlrGroup(mat, Group)

Arguments

mat	Data matrix with replicates as columns
Group	Factor of length ncol(mat)

Value

Resulting normalized matrix of the same size as the initial one

References

*Find reference to mlr paper*

See Also

mlrrep, mlr

Examples

res = mlrGroup(iris[,-5], Group=as.factor(c("Sepal", "Sepal", "Petal", "Petal")))

layout(matrix(1:3, nrow=1))
boxplot(log(iris[,-5]), main="Log only")
boxplot(log(medianNorm(iris[,-5])), main="Median")
boxplot(log(res[[1]]), main="MLR")

SwathXtend documentation built on Nov. 8, 2020, 6:42 p.m.