Files in TBSignatureProfiler

Profile RA-Seq Data Using TB Pathway Signatures

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/TBcommon.rda

data/TB_indian.rda

data/sigAnnotData.rda

data/common_sigAnnotData.rda

data/TBsignatures.rda

data/TB_hiv.rda

R/profile.R R/bootstrap.R R/plot.R R/evaluate.R R/TBSPapp.R R/data.R vignettes/tbspVignette.Rmd man/compareAlgs.Rd man/signatureHeatmap.Rd man/plotQuantitative.Rd man/Bootstrap_LOOCV_LR_AUC.Rd man/signatureGeneHeatmap.Rd man/sigAnnotData.Rd man/tableAUC.Rd man/common_sigAnnotData.Rd man/bootstrapAUC.Rd man/TB_hiv.Rd man/compareBoxplots.Rd man/TBsignatures.Rd man/signatureROCplot.Rd man/TB_indian.Rd man/runTBsigProfiler.Rd man/signatureROCplot_CI.Rd man/deseq2_norm_rle.Rd man/signatureBoxplot.Rd man/SignatureQuantitative.Rd man/TBcommon.Rd man/LOOAUC_simple_multiple_noplot_one_df.Rd man/mkAssay.Rd man/distinctColors.Rd man/TBSPapp.Rd tests/testthat.R tests/spelling.R tests/testthat/test-profile.R tests/testthat/test-lint.R tests/testthat/test-plot.R tests/testthat/test-bootstrap.R tests/testthat/test-evaluate.R

inst/WORDLIST

inst/doc/tbspVignette.R inst/doc/tbspVignette.Rmd

inst/doc/tbspVignette.html

inst/shiny/app.R inst/shiny/server/server_auc.R inst/shiny/server/server_profiler.R inst/shiny/server/server_visualization.R inst/shiny/server/server_upload.R inst/shiny/ui/ui_auc.R inst/shiny/ui/ui_visualization.R inst/shiny/ui/ui_profiler.R inst/shiny/ui/ui_upload.R

TBSignatureProfiler documentation built on Nov. 8, 2020, 6:56 p.m.