Files in TimeSeriesExperiment

Analysis for short time-series data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/endoderm_small.rda

R/pathway_over_representation.R R/differential_expression.R R/pca.R R/utils.R R/clustering.R R/plots.R R/data.R R/TimeSeriesExperiment-methods.R R/TimeSeriesExperiment-class.R

vignettes/de_trajectory_cop1.rds

vignettes/cop1_knockout_timecourse.Rmd

vignettes/enrich_res_cop1.rds

man/clusterData.Rd man/show-methods.Rd man/plotTimeSeries.Rd man/makeTimeSeries.Rd man/row_and_colnames.Rd man/plotTimeSeriesClusters.Rd man/differentialExpression.Rd man/dot-addLagsToTimeSeries.Rd man/plotTimeSeriesPCA.Rd man/dataToTimeSeries.Rd man/dimensionReduction.Rd man/makeTimeSeriesExperimentFromSummarizedExperiment.Rd man/plotHeatmap.Rd man/pipe.Rd man/assignClusterStatic.Rd man/TimeSeriesExperiment.Rd man/collapseReplicates.Rd man/timeSeries.Rd man/addLags.Rd man/clusterAssignment.Rd man/collapsed-data.Rd man/plotSamplePCA.Rd man/filterFeatures.Rd man/groups.Rd man/varianceStabilization.Rd man/meltMatrix.Rd man/clusterTimeSeries.Rd man/timepointDE.Rd man/dot-imputeData.Rd man/colData.Rd man/pathwayEnrichment.Rd man/timepoints.Rd man/rowData.Rd man/plotEnrichment.Rd man/normalizeData.Rd man/makeTimeSeriesExperimentFromExpressionSet.Rd man/trajectoryDE.Rd man/replicates.Rd man/runPCA.Rd man/assignClusterDynamic.Rd man/endoderm_small.Rd inst/doc/cop1_knockout_timecourse.Rmd inst/doc/cop1_knockout_timecourse.R

inst/doc/cop1_knockout_timecourse.html

inst/data-raw/endoderm.R

TimeSeriesExperiment documentation built on Nov. 8, 2020, 11:09 p.m.