collapseReplicates: Collapse data over replicates.

In TimeSeriesExperiment: Analysis for short time-series data

Description

This function aggregates the data over replicates, i.e. returns collapse data for each group and at each time point.

Usage

collapseReplicates(object, FUN = mean)

Arguments

object	A TimeSeriesExperiment object
FUN	the aggreagate function. Default is mean

Value

Returns TimeSeriesExperiment object after collapsing over replicates. Collapsed data is stored sample.data.collapsed and data.collapsed slots.

Examples

data("endoderm_small")
endoderm_small <- collapseReplicates(endoderm_small)
assayCollapsed(endoderm_small)[1:10, 1:6]

TimeSeriesExperiment documentation built on Nov. 8, 2020, 11:09 p.m.