plotTimeSeriesPCA: Overlay (time) series over PCA grid

In TimeSeriesExperiment: Analysis for short time-series data

Description

PCA plot for data features, with time-series levels overlayed on top.

Usage

plotTimeSeriesPCA(object, axis = c(1, 2), m = 20, n = 20,
  group.highlight = NULL, linecol = NULL, ...)

Arguments

object	A TimeSeriesExperiment object.
axis	An integer vector indicating principal components to use for plotting, by default 1:2.
m	a number of tiles in a grid in the horizontal direction.
n	a number of tiles in a grid in the vertical direction.
group.highlight	An optional character string indicating the group subset for which the time-course trends should be plotted. By default all time-course trends are plotted for all groups.
linecol	a vector indicating the color of the gene profile trend line, different for each group.
...	other parameters for the line plots.

Value

None

Examples

data("endoderm_small")
endoderm_small <- runPCA(endoderm_small)
plotTimeSeriesPCA(endoderm_small)

TimeSeriesExperiment documentation built on Nov. 8, 2020, 11:09 p.m.