addsyms: add gene symbols to a GRanges that uses ensembl identifiers
In TxRegInfra: Metadata management for multiomic specification of transcriptional regulatory networks
Description
Usage
Arguments
Value
Note
Description
add gene symbols to a GRanges that uses ensembl identifiers
Usage
1
addsyms(x, EnsDb = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75)
Arguments
x
a GRanges assumed to have mcols element 'gene_id' with ensembl gene identifiers
EnsDb
an instance of EnsDb
Value
a GRanges with mcols column 'symbol'
Note
At this time no checking of reference genome consistency is performed.
TxRegInfra documentation built on Nov. 8, 2020, 5:15 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Note
Description
add gene symbols to a GRanges that uses ensembl identifiers
Usage
1 | addsyms(x, EnsDb = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75)
|
Arguments
x |
a GRanges assumed to have mcols element 'gene_id' with ensembl gene identifiers |
EnsDb |
an instance of EnsDb |
Value
a GRanges with mcols column 'symbol'
Note
At this time no checking of reference genome consistency is performed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.